HDLBP (Tetraodon nigroviridis)
KH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00013 (KH_1) IPR018111 ENSTNIG00000004185 T19599_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
ENSTNIP00000006806 KH 101 146
ENSTNIP00000006806 KH 155 215
ENSTNIP00000006806 KH 227 287
ENSTNIP00000006806 KH 300 360
ENSTNIP00000006806 KH 371 427
ENSTNIP00000006806 KH 440 500
ENSTNIP00000006806 KH 512 573
ENSTNIP00000006806 KH 586 646
ENSTNIP00000006806 KH 658 719
ENSTNIP00000006806 KH 732 793
ENSTNIP00000006806 KH 805 866
ENSTNIP00000006806 KH 878 968
ENSTNIP00000006806 KH 975 1037
ENSTNIP00000006806 KH 1057 1118
ENSTNIP00000006806 KH 1130 1191

Links

Other KH family RBPs
Other Tetraodon nigroviridis RBPs

32 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
HDLBP Takifugu rubripes ENSTRUG00000012148 N 0.950
HDLBP Oryzias latipes ENSORLG00000002226 N 0.910
HDLBP Gasterosteus aculeatus ENSGACG00000004648 N 0.891
hdlbp Danio rerio ENSDARG00000009830 N 0.876
HDLBP Meleagris gallopavo ENSMGAG00000003686 N 0.812
VIGLN_CHICK Gallus gallus ENSGALG00000005823 N 0.811
HDLBP Monodelphis domestica ENSMODG00000016033 N 0.799
ENSOANG00000011759 Ornithorhynchus anatinus ENSOANG00000011759 N 0.799
Ame_R011476 Ailuropoda melanoleuca Ame_R011476 N 0.793
HDLBP Canis familiaris ENSCAFG00000012913 N 0.792
Hdlbp Rattus norvegicus ENSRNOG00000031479 N 0.792
Hdlbp Mus musculus ENSMUSG00000034088 N 0.791
LOC100057882 Equus caballus ENSECAG00000012829 N 0.790
HDLBP Cavia porcellus ENSCPOG00000006297 N 0.790
HDLBP Pan troglodytes ENSPTRG00000013121 N 0.789
HDLBP Ochotona princeps ENSOPRG00000011965 N 0.788
HDLBP Homo sapiens ENSG00000115677 N 0.788
HDLBP Gorilla gorilla ENSGGOG00000004392 N 0.788
HDLBP Oryctolagus cuniculus ENSOCUG00000012667 N 0.787
HDLBP Loxodonta africana ENSLAFG00000014826 N 0.786
HDLBP Callithrix jacchus ENSCJAG00000006152 N 0.783
HDLBP Pteropus vampyrus ENSPVAG00000000555 N 0.783
ENSPPYG00000013351 Pongo pygmaeus ENSPPYG00000013351 N 0.779
hdlbp Xenopus tropicalis ENSXETG00000012164 N 0.772
AAH44314 Xenopus laevis AAH44314 N 0.772
HDLBP Myotis lucifugus ENSMLUG00000005628 N 0.767
ENSACAG00000003606 Anolis carolinensis ENSACAG00000003606 N 0.740
ENSTRUG00000012888 Takifugu rubripes ENSTRUG00000012888 N 0.728
HDLBP Felis catus ENSFCAG00000010455 N 0.727
ENSORLG00000006581 Oryzias latipes ENSORLG00000006581 N 0.727
ENSTNIG00000002555 Tetraodon nigroviridis ENSTNIG00000002555 N 0.720
ENSGACG00000019361 Gasterosteus aculeatus ENSGACG00000019361 N 0.712