CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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PCBP2
(
Myotis lucifugus
)
KH
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00013 (KH_1)
IPR018111
ENSMLUG00000009971
T19038_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
PCBP2
M043_0.6
Homo sapiens
CCYYCCH
RNAcompete
Ray et al.(2013)
RNCMPT00044
0.856
pcbp2
M211_0.6
Danio rerio
WWUCCC
RNAcompete
Ray et al.(2013)
RNCMPT00246
0.819
Pcbp1
M207_0.6
Mus musculus
CYUUCC
RNAcompete
Ray et al.(2013)
RNCMPT00239
0.798
PCBP1
M177_0.6
Homo sapiens
CCWWHCC
RNAcompete
Ray et al.(2013)
RNCMPT00186
0.798
Pcbp3
M188_0.6
Mus musculus
UUUYCC
RNAcompete
Ray et al.(2013)
RNCMPT00215
0.745
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSMLUP00000009098
KH
15
75
TIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPTNAIFKAFAMI
ENSMLUP00000009098
KH
125
162
XSTGAQVQVAGDMLPNSTERAITIAGIPQSIIECVKQI
ENSMLUP00000009098
KH
290
352
SHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLI
Links
Other
KH
family RBPs
Other
Myotis lucifugus
RBPs
90 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
Ame_R004936
Ailuropoda melanoleuca
Ame_R004936
I
0.000
SRSF5
Anolis carolinensis
ENSACAG00000005143
I
0.000
ENSACAG00000005544
Anolis carolinensis
ENSACAG00000005544
I
0.000
A6H7B7_BOVIN
Bos taurus
ENSBTAG00000011596
I
0.000
estExt_fgenesh2_pm.C_690014
Branchiostoma floridae
estExt_fgenesh2_pm.C_690014
I
0.000
A6MLI3_CALJA
Callithrix jacchus
ENSCJAG00000014884
I
0.000
SRSF5
Canis familiaris
ENSCAFG00000016589
I
0.000
SRSF5
Cavia porcellus
ENSCPOG00000005949
I
0.000
srsf5b
Danio rerio
ENSDARG00000027734
I
0.000
srsf5a
Danio rerio
ENSDARG00000029818
I
0.000
SRSF5
Dasypus novemcinctus
ENSDNOG00000006160
I
0.000
Srsf5
Dipodomys ordii
ENSDORG00000003989
I
0.000
SRSF5
Echinops telfairi
ENSETEG00000020396
I
0.000
LOC100053264
Equus caballus
ENSECAG00000026873
I
0.000
SRSF5
Felis catus
ENSFCAG00000008848
I
0.000
Q5ZLF9_CHICK
Gallus gallus
ENSGALG00000009421
I
0.000
SRSF5
Gasterosteus aculeatus
ENSGACG00000007834
I
0.000
ENSGACG00000011761
Gasterosteus aculeatus
ENSGACG00000011761
I
0.000
SRSF5
Gorilla gorilla
ENSGGOG00000016462
I
0.000
SRSF5
Homo sapiens
ENSG00000100650
D
0.000
SRSF5
Loxodonta africana
ENSLAFG00000005260
I
0.000
SRSF5
Macaca mulatta
ENSMMUG00000022407
I
0.000
SRSF5
Monodelphis domestica
ENSMODG00000011362
I
0.000
Srsf5
Mus musculus
ENSMUSG00000021134
I
0.000
SRSF5
Myotis lucifugus
ENSMLUG00000011939
I
0.000
SRSF5
Ochotona princeps
ENSOPRG00000008286
I
0.000
SRSF5
Ornithorhynchus anatinus
ENSOANG00000013336
I
0.000
SRSF5
Oryctolagus cuniculus
ENSOCUG00000009274
I
0.000
SRSF5
Oryzias latipes
ENSORLG00000009268
I
0.000
SRSF5
Otolemur garnettii
ENSOGAG00000015122
I
0.000
SRSF5
Pan troglodytes
ENSPTRG00000006488
I
0.000
ENSPPYG00000005945
Pongo pygmaeus
ENSPPYG00000005945
I
0.000
SRSF5
Pteropus vampyrus
ENSPVAG00000009828
I
0.000
Sfrs5
Rattus norvegicus
ENSRNOG00000005513
I
0.000
SRSF5
Sorex araneus
ENSSARG00000001059
I
0.000
SRSF5
Sus scrofa
ENSSSCG00000002312
I
0.000
SFRS5
Taeniopygia guttata
ENSTGUG00000011425
I
0.000
SRSF5
Takifugu rubripes
ENSTRUG00000017811
I
0.000
PACS2
Takifugu rubripes
ENSTRUG00000010740
I
0.000
SRSF5
Tarsius syrichta
ENSTSYG00000007786
I
0.000
SRSF5
Tetraodon nigroviridis
ENSTNIG00000016411
I
0.000
SRSF5
Tupaia belangeri
ENSTBEG00000001972
I
0.000
SRSF5
Tursiops truncatus
ENSTTRG00000003318
I
0.000
SRSF5
Vicugna pacos
ENSVPAG00000006448
I
0.000
AAH44085
Xenopus laevis
AAH44085
I
0.000
AAH71160
Xenopus laevis
AAH71160
I
0.000
srsf5
Xenopus tropicalis
ENSXETG00000002211
I
0.000
XB-GENE-5954653
Xenopus tropicalis
ENSXETG00000017937
I
0.000