CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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PCBP2
(
Myotis lucifugus
)
KH
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00013 (KH_1)
IPR018111
ENSMLUG00000009971
T19038_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
PCBP2
M043_0.6
Homo sapiens
CCYYCCH
RNAcompete
Ray et al.(2013)
RNCMPT00044
0.856
pcbp2
M211_0.6
Danio rerio
WWUCCC
RNAcompete
Ray et al.(2013)
RNCMPT00246
0.819
PCBP1
M177_0.6
Homo sapiens
CCWWHCC
RNAcompete
Ray et al.(2013)
RNCMPT00186
0.798
Pcbp1
M207_0.6
Mus musculus
CYUUCC
RNAcompete
Ray et al.(2013)
RNCMPT00239
0.798
Pcbp3
M188_0.6
Mus musculus
UUUYCC
RNAcompete
Ray et al.(2013)
RNCMPT00215
0.745
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSMLUP00000009098
KH
15
75
TIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPTNAIFKAFAMI
ENSMLUP00000009098
KH
125
162
XSTGAQVQVAGDMLPNSTERAITIAGIPQSIIECVKQI
ENSMLUP00000009098
KH
290
352
SHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLI
Links
Other
KH
family RBPs
Other
Myotis lucifugus
RBPs
90 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
FUBP1
Callithrix jacchus
ENSCJAG00000007062
I
0.000
KHSRP
Canis familiaris
ENSCAFG00000018667
I
0.000
FUBP1
Cavia porcellus
ENSCPOG00000002757
I
0.000
FUBP1
Felis catus
ENSFCAG00000010330
N
0.000
FUBP1
Macropus eugenii
ENSMEUG00000007917
N
0.000
FUBP1
Oryctolagus cuniculus
ENSOCUG00000002225
I
0.000
KHSRP
Tarsius syrichta
ENSTSYG00000011552
N
0.000
FUBP1
Tupaia belangeri
ENSTBEG00000017333
N
0.000