CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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nasonia_NCBI_hmm496514
(
Nasonia vitripennis
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
nasonia_NCBI_hmm496514
T32258_0.6
DroSpeGe (2008-Jul-18)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
bru-3
M117_0.6
Drosophila melanogaster
KUGKUGU
RNAcompete
Ray et al.(2013)
RNCMPT00122
0.893
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
nasonia_NCBI_hmm496514
RRM
56
124
LFVGMLSKQQTEDDVRQLFTAFGTIEECTILRGPDGTSRGCAFIKFSTHQEAQSAINSLHGSQTMPGAS
nasonia_NCBI_hmm496514
RRM
324
394
LFIYHLPQEFGDAELMQMFIPFGNVISSKVFIDRATNQSKCFGFVSFDNQQCAQAAIQAMNGFQIGMKRLK
Links
Other
RRM
family RBPs
Other
Nasonia vitripennis
RBPs
57 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
AAEL014033
Aedes aegypti
AAEL014033
I
0.886
CELF5
Anolis carolinensis
ENSACAG00000016959
I
0.807
AGAP004950
Anopheles gambiae
AGAP004950
I
0.893
amel4_ncbi_hmm7761
Apis mellifera
amel4_ncbi_hmm7761
I
0.914
Q2KI16_BOVIN
Bos taurus
ENSBTAG00000008937
I
0.721
estExt_fgenesh2_pm.C_730008
Branchiostoma floridae
estExt_fgenesh2_pm.C_730008
I
0.721
CJA07020
Caenorhabditis japonica
CJA07020
I
0.736
LOC100391960
Callithrix jacchus
ENSCJAG00000020663
I
0.721
LOC100414308
Callithrix jacchus
ENSCJAG00000018355
I
0.771
CELF5
Callithrix jacchus
ENSCJAG00000014799
I
0.807
CELF5
Cavia porcellus
ENSCPOG00000005740
I
0.807
GF10965
Drosophila ananassae
FBgn0088005
I
0.893
GG13757
Drosophila erecta
FBgn0106020
I
0.893
GH14684
Drosophila grimshawi
FBgn0122160
I
0.893
bru-3
Drosophila melanogaster
FBgn0262350
D
0.893
GI13095
Drosophila mojavensis
FBgn0135852
I
0.893
GL21647
Drosophila persimilis
FBgn0159240
I
0.879
GA28624-RA
Drosophila pseudoobscura
FBgn0249984
I
0.900
GM24582
Drosophila sechellia
FBgn0179445
I
0.893
GD12651
Drosophila simulans
FBgn0184378
I
0.893
GJ13842
Drosophila virilis
FBgn0201061
I
0.893
GK17101
Drosophila willistoni
FBgn0219100
I
0.893
GE20053
Drosophila yakuba
FBgn0237378
I
0.893
A5A2G4_CHICK
Gallus gallus
ENSGALG00000001966
I
0.850
A5A2G2_CHICK
Gallus gallus
ENSGALG00000002413
I
0.871
CELF5
Gasterosteus aculeatus
ENSGACG00000012870
I
0.836
CELF6
Gasterosteus aculeatus
ENSGACG00000016626
I
0.857
ENSGGOG00000023049
Gorilla gorilla
ENSGGOG00000023049
I
0.786
CELF5
Gorilla gorilla
ENSGGOG00000002078
I
0.809
CELF2
Gorilla gorilla
ENSGGOG00000009330
I
0.721
62054
Helobdella robusta
62054
I
0.757
90208
Helobdella robusta
90208
I
0.794
BRUNOL6
Homo sapiens
ENSG00000140488
D
0.771
LOAG_05508
Loa loa
LOAG_05508
I
0.800
estExt_fgenesh2_pg.C_sca_1310025
Lottia gigantea
estExt_fgenesh2_pg.C_sca_1310025
I
0.743
CELF4
Loxodonta africana
ENSLAFG00000021352
I
0.864
HEXA
Macaca mulatta
ENSMMUG00000010687
I
0.771
CELF5
Monodelphis domestica
ENSMODG00000019151
I
0.814
CELF6
Monodelphis domestica
ENSMODG00000001784
I
0.829
Celf6
Mus musculus
ENSMUSG00000032297
I
0.779
CELF5
Ochotona princeps
ENSOPRG00000007881
I
0.771
CELF6
Ochotona princeps
ENSOPRG00000019169
I
0.771
CELF6
Ornithorhynchus anatinus
ENSOANG00000011308
I
0.857
CELF2
Ornithorhynchus anatinus
ENSOANG00000015432
I
0.721
CELF6
Oryzias latipes
ENSORLG00000013392
I
0.857
CELF6
Pan troglodytes
ENSPTRG00000034360
I
0.771
PHUM315130
Pediculus humanus
PHUM315130
I
0.886
Brunol4
Rattus norvegicus
ENSRNOG00000014503
I
0.857
Sjc_0024790
Schistosoma japonicum
Sjc_0024790
I
0.729
Smp_131780
Schistosoma mansoni
Smp_131780
I
0.736
Smp_041280
Schistosoma mansoni
Smp_041280
I
0.814
BRUNOL4
Taeniopygia guttata
ENSTGUG00000001649
I
0.871
CELF5
Takifugu rubripes
ENSTRUG00000017937
I
0.843
CELF3
Takifugu rubripes
ENSTRUG00000012064
I
0.764
CELF6
Takifugu rubripes
ENSTRUG00000012391
I
0.857
CELF5
Tetraodon nigroviridis
ENSTNIG00000010634
I
0.843
CELF3
Tupaia belangeri
ENSTBEG00000010130
I
0.700