HNRNPR (Callithrix jacchus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSCJAG00000005512 T35525_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
ENSGALG00000000814
M242_0.6 		Gallus gallus MMAAAWY RNAcompete
Ray et al.(2013)
RNCMPT00288 		0.975
ENSXETG00000007102
M243_0.6 		Xenopus tropicalis MAAAAAG RNAcompete
Ray et al.(2013)
RNCMPT00289 		0.920
ENSXETG00000018075
M236_0.6 		Xenopus tropicalis MAAAWWD RNAcompete
Ray et al.(2013)
RNCMPT00281 		0.851
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCJAP00000010141 RRM 129 197
ENSCJAP00000010141 RRM 210 277
ENSCJAP00000010141 RRM 305 367
ENSCJAP00000010187 RRM 88 155
ENSCJAP00000010187 RRM 183 245
ENSCJAP00000010204 RRM 167 235
ENSCJAP00000010204 RRM 248 315
ENSCJAP00000010204 RRM 343 405
ENSCJAP00000010206 RRM 9 77
ENSCJAP00000010206 RRM 90 161
ENSCJAP00000010206 RRM 189 251
ENSCJAP00000010211 RRM 167 235
ENSCJAP00000010211 RRM 248 318
ENSCJAP00000010211 RRM 346 408
ENSCJAP00000045572 RRM 66 134
ENSCJAP00000045572 RRM 147 217
ENSCJAP00000045572 RRM 245 307

Links

Other RRM family RBPs
Other Callithrix jacchus RBPs

88 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Ame_R001024 Ailuropoda melanoleuca Ame_R001024 I 1.000
Ame_R011496 Ailuropoda melanoleuca Ame_R011496 I 0.847
SYNCRIP Anolis carolinensis ENSACAG00000015234 I 0.837
HNRNPR Anolis carolinensis ENSACAG00000017593 I 0.990
A3KMV6_BOVIN Bos taurus ENSBTAG00000016578 I 1.000
A7E355_BOVIN Bos taurus ENSBTAG00000006672 I 0.847
SYNCRIP Callithrix jacchus ENSCJAG00000015352 I 0.847
ENSCJAG00000013031 Callithrix jacchus ENSCJAG00000013031 I 0.882
HNRNPR Canis familiaris ENSCAFG00000013308 I 0.990
SYNCRIP Canis familiaris ENSCAFG00000003024 I 0.847
ENSCPOG00000009653 Cavia porcellus ENSCPOG00000009653 I 1.000
SYNCRIP Cavia porcellus ENSCPOG00000012415 I 0.847
HNRNPR Choloepus hoffmanni ENSCHOG00000005090 I 1.000
syncripl Danio rerio ENSDARG00000026723 I 0.818
syncrip Danio rerio ENSDARG00000040184 I 0.847
SYNCRIP Dasypus novemcinctus ENSDNOG00000018345 I 0.705
Syncrip Dipodomys ordii ENSDORG00000005217 I 0.725
SYNCRIP Echinops telfairi ENSETEG00000020109 I 0.847
HNRNPR Equus caballus ENSECAG00000013733 I 1.000
LOC100070472 Equus caballus ENSECAG00000012464 I 0.703
HNRNPR Erinaceus europaeus ENSEEUG00000010120 I 0.951
HNRNPR Felis catus ENSFCAG00000019123 I 0.744
ENSGALG00000000814 Gallus gallus ENSGALG00000000814 D 0.975
Q5ZLH7_CHICK Gallus gallus ENSGALG00000015830 I 0.842
SYNCRIP Gasterosteus aculeatus ENSGACG00000009124 I 0.828
SYNCRIP Gasterosteus aculeatus ENSGACG00000011665 I 0.847
HNRNPR Gasterosteus aculeatus ENSGACG00000003202 I 0.856
SYNCRIP Gorilla gorilla ENSGGOG00000012898 I 0.847
HNRNPR Gorilla gorilla ENSGGOG00000013250 I 1.000
HNRNPR Homo sapiens ENSG00000125944 I 1.000
SYNCRIP Homo sapiens ENSG00000135316 I 0.847
HNRNPR Loxodonta africana ENSLAFG00000012793 I 1.000
SYNCRIP Loxodonta africana ENSLAFG00000018172 I 0.847
HNRNPR Macaca mulatta ENSMMUG00000010970 I 1.000
SYNCRIP Macaca mulatta ENSMMUG00000012575 I 0.847
HNRNPR Macropus eugenii ENSMEUG00000003769 I 0.830
HNRNPR Meleagris gallopavo ENSMGAG00000001000 I 0.975
SYNCRIP Meleagris gallopavo ENSMGAG00000013690 I 0.842
SYNCRIP Microcebus murinus ENSMICG00000007192 I 0.847
XM_001362737.1 Monodelphis domestica ENSMODG00000000609 I 0.847
HNRNPR Monodelphis domestica ENSMODG00000016144 I 0.995
XM_001366708.1 Monodelphis domestica ENSMODG00000018345 I 0.847
Hnrnpr Mus musculus ENSMUSG00000066037 I 1.000
Syncrip Mus musculus ENSMUSG00000032423 I 0.851
SYNCRIP Myotis lucifugus ENSMLUG00000006919 I 0.847
HNRNPR Myotis lucifugus ENSMLUG00000007582 I 0.936
HNRNPR Ochotona princeps ENSOPRG00000014561 I 0.863
HNRNPR Ornithorhynchus anatinus ENSOANG00000003961 I 0.980
SYNCRIP Ornithorhynchus anatinus ENSOANG00000010099 I 0.837
SYNCRIP Oryctolagus cuniculus ENSOCUG00000000601 I 0.847
HNRNPR Oryctolagus cuniculus ENSOCUG00000006686 I 0.990
SYNCRIP Oryzias latipes ENSORLG00000009190 I 0.851
HNRNPR Oryzias latipes ENSORLG00000002515 I 0.849
SYNCRIP Oryzias latipes ENSORLG00000014840 I 0.823
SYNCRIP Otolemur garnettii ENSOGAG00000001721 I 0.725
HNRNPR Otolemur garnettii ENSOGAG00000009179 I 0.985
XR_022081.1 Pan troglodytes ENSPTRG00000018393 I 0.847
HNRNPR Pan troglodytes ENSPTRG00000000324 I 1.000
ENSPPYG00000016819 Pongo pygmaeus ENSPPYG00000016819 I 0.847
ENSPPYG00000001744 Pongo pygmaeus ENSPPYG00000001744 I 1.000
HNRNPR Procavia capensis ENSPCAG00000010462 I 0.830
SYNCRIP Pteropus vampyrus ENSPVAG00000011888 I 0.847
HNRNPR Pteropus vampyrus ENSPVAG00000014804 I 1.000
Syncrip Rattus norvegicus ENSRNOG00000000204 I 0.851
Hnrnpr Rattus norvegicus ENSRNOG00000011910 I 1.000
ENSRNOG00000033356 Rattus norvegicus ENSRNOG00000033356 I 0.797
HNRNPR Sorex araneus ENSSARG00000001732 I 1.000
SYNCRIP Sorex araneus ENSSARG00000005967 I 0.847
SYNCRIP Sus scrofa ENSSSCG00000004294 I 0.847
HNRNPR Taeniopygia guttata ENSTGUG00000000880 I 0.975
SYNCRIP Taeniopygia guttata ENSTGUG00000012478 N 0.870
SYNCRIP Takifugu rubripes ENSTRUG00000014766 I 0.837
HNRNPR Takifugu rubripes ENSTRUG00000008817 I 0.847
SYNCRIP Takifugu rubripes ENSTRUG00000005365 I 0.818
SYNCRIP Tarsius syrichta ENSTSYG00000013305 I 0.847
HNRNPR Tetraodon nigroviridis ENSTNIG00000017576 I 0.851
SYNCRIP Tetraodon nigroviridis ENSTNIG00000017299 I 0.818
SYNCRIP Tetraodon nigroviridis ENSTNIG00000002821 I 0.828
HNRNPR Tupaia belangeri ENSTBEG00000002251 I 1.000
SYNCRIP Tupaia belangeri ENSTBEG00000015956 N 0.878
SYNCRIP Tursiops truncatus ENSTTRG00000004471 N 0.878
HNRNPR Tursiops truncatus ENSTTRG00000007752 I 0.921
SYNCRIP Vicugna pacos ENSVPAG00000001061 I 0.847
AAI61702 Xenopus laevis AAI61702 I 0.910
AAH70529 Xenopus laevis AAH70529 I 0.851
ENSXETG00000018075 Xenopus tropicalis ENSXETG00000018075 D 0.842
ENSXETG00000007102 Xenopus tropicalis ENSXETG00000007102 D 0.920