syncripl (Danio rerio)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSDARG00000026723 T36113_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
ENSXETG00000018075
M236_0.6 		Xenopus tropicalis MAAAWWD RNAcompete
Ray et al.(2013)
RNCMPT00281 		0.891
ENSXETG00000007102
M243_0.6 		Xenopus tropicalis MAAAAAG RNAcompete
Ray et al.(2013)
RNCMPT00289 		0.847
ENSGALG00000000814
M242_0.6 		Gallus gallus MMAAAWY RNAcompete
Ray et al.(2013)
RNCMPT00288 		0.823
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSDARP00000037410 RRM 165 235
ENSDARP00000037410 RRM 246 313
ENSDARP00000037410 RRM 341 403
ENSDARP00000094395 RRM 165 235
ENSDARP00000094395 RRM 246 313
ENSDARP00000094395 RRM 341 403

Links

Other RRM family RBPs
Other Danio rerio RBPs

82 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Ame_R001024 Ailuropoda melanoleuca Ame_R001024 I 0.818
Ame_R011496 Ailuropoda melanoleuca Ame_R011496 I 0.896
SYNCRIP Anolis carolinensis ENSACAG00000015234 I 0.881
HNRNPR Anolis carolinensis ENSACAG00000017593 I 0.823
A3KMV6_BOVIN Bos taurus ENSBTAG00000016578 I 0.818
A7E355_BOVIN Bos taurus ENSBTAG00000006672 I 0.896
HNRNPR Callithrix jacchus ENSCJAG00000005512 I 0.818
ENSCJAG00000013031 Callithrix jacchus ENSCJAG00000013031 I 0.724
SYNCRIP Callithrix jacchus ENSCJAG00000015352 I 0.896
SYNCRIP Canis familiaris ENSCAFG00000003024 I 0.896
HNRNPR Canis familiaris ENSCAFG00000013308 I 0.811
SYNCRIP Cavia porcellus ENSCPOG00000012415 I 0.896
ENSCPOG00000009653 Cavia porcellus ENSCPOG00000009653 I 0.818
HNRNPR Choloepus hoffmanni ENSCHOG00000005090 I 0.806
syncrip Danio rerio ENSDARG00000040184 I 0.886
SYNCRIP Dasypus novemcinctus ENSDNOG00000018345 I 0.728
Syncrip Dipodomys ordii ENSDORG00000005217 I 0.752
SYNCRIP Echinops telfairi ENSETEG00000020109 I 0.896
HNRNPR Equus caballus ENSECAG00000013733 I 0.818
LOC100070472 Equus caballus ENSECAG00000012464 I 0.743
HNRNPR Erinaceus europaeus ENSEEUG00000010120 I 0.780
ENSGALG00000000814 Gallus gallus ENSGALG00000000814 D 0.818
Q5ZLH7_CHICK Gallus gallus ENSGALG00000015830 I 0.901
SYNCRIP Gasterosteus aculeatus ENSGACG00000009124 I 0.955
SYNCRIP Gasterosteus aculeatus ENSGACG00000011665 I 0.911
HNRNPR Gasterosteus aculeatus ENSGACG00000003202 I 0.822
SYNCRIP Gorilla gorilla ENSGGOG00000012898 I 0.896
HNRNPR Gorilla gorilla ENSGGOG00000013250 I 0.818
HNRNPR Homo sapiens ENSG00000125944 I 0.818
SYNCRIP Homo sapiens ENSG00000135316 I 0.896
SYNCRIP Loxodonta africana ENSLAFG00000018172 I 0.896
HNRNPR Loxodonta africana ENSLAFG00000012793 I 0.818
HNRNPR Macaca mulatta ENSMMUG00000010970 I 0.818
SYNCRIP Macaca mulatta ENSMMUG00000012575 I 0.896
HNRNPR Meleagris gallopavo ENSMGAG00000001000 I 0.818
SYNCRIP Meleagris gallopavo ENSMGAG00000013690 I 0.901
SYNCRIP Microcebus murinus ENSMICG00000007192 I 0.896
XM_001362737.1 Monodelphis domestica ENSMODG00000000609 I 0.896
HNRNPR Monodelphis domestica ENSMODG00000016144 I 0.813
XM_001366708.1 Monodelphis domestica ENSMODG00000018345 I 0.896
Hnrnpr Mus musculus ENSMUSG00000066037 I 0.818
Syncrip Mus musculus ENSMUSG00000032423 I 0.896
SYNCRIP Myotis lucifugus ENSMLUG00000006919 I 0.891
HNRNPR Myotis lucifugus ENSMLUG00000007582 I 0.771
HNRNPR Ochotona princeps ENSOPRG00000014561 I 0.733
HNRNPR Ornithorhynchus anatinus ENSOANG00000003961 I 0.818
SYNCRIP Ornithorhynchus anatinus ENSOANG00000010099 I 0.896
SYNCRIP Oryctolagus cuniculus ENSOCUG00000000601 I 0.896
HNRNPR Oryctolagus cuniculus ENSOCUG00000006686 I 0.811
SYNCRIP Oryzias latipes ENSORLG00000014840 I 0.926
SYNCRIP Oryzias latipes ENSORLG00000009190 I 0.891
HNRNPR Oryzias latipes ENSORLG00000002515 I 0.800
HNRNPR Otolemur garnettii ENSOGAG00000009179 I 0.796
SYNCRIP Otolemur garnettii ENSOGAG00000001721 I 0.752
XR_022081.1 Pan troglodytes ENSPTRG00000018393 I 0.896
HNRNPR Pan troglodytes ENSPTRG00000000324 I 0.806
ENSPPYG00000016819 Pongo pygmaeus ENSPPYG00000016819 I 0.896
ENSPPYG00000001744 Pongo pygmaeus ENSPPYG00000001744 I 0.818
HNRNPR Procavia capensis ENSPCAG00000010462 I 0.704
SYNCRIP Pteropus vampyrus ENSPVAG00000011888 I 0.896
HNRNPR Pteropus vampyrus ENSPVAG00000014804 I 0.806
Syncrip Rattus norvegicus ENSRNOG00000000204 I 0.896
Hnrnpr Rattus norvegicus ENSRNOG00000011910 I 0.818
HNRNPR Sorex araneus ENSSARG00000001732 I 0.806
SYNCRIP Sorex araneus ENSSARG00000005967 I 0.896
SYNCRIP Sus scrofa ENSSSCG00000004294 I 0.896
HNRNPR Taeniopygia guttata ENSTGUG00000000880 I 0.818
SYNCRIP Takifugu rubripes ENSTRUG00000014766 I 0.891
SYNCRIP Takifugu rubripes ENSTRUG00000005365 I 0.941
HNRNPR Takifugu rubripes ENSTRUG00000008817 I 0.803
SYNCRIP Tarsius syrichta ENSTSYG00000013305 I 0.896
HNRNPR Tetraodon nigroviridis ENSTNIG00000017576 I 0.807
SYNCRIP Tetraodon nigroviridis ENSTNIG00000017299 I 0.941
SYNCRIP Tetraodon nigroviridis ENSTNIG00000002821 I 0.896
HNRNPR Tupaia belangeri ENSTBEG00000002251 I 0.806
HNRNPR Tursiops truncatus ENSTTRG00000007752 I 0.762
SYNCRIP Vicugna pacos ENSVPAG00000001061 I 0.896
AAH70529 Xenopus laevis AAH70529 I 0.891
AAI61702 Xenopus laevis AAI61702 I 0.837
ENSXETG00000007102 Xenopus tropicalis ENSXETG00000007102 D 0.842
ENSXETG00000018075 Xenopus tropicalis ENSXETG00000018075 D 0.891