LOC100015949 (Monodelphis domestica)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSMODG00000003936 T39070_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
ELAVL2
M330_0.6 		Homo sapiens RWUUUAUUUWR SELEX
Cook et al.(2011)
784_7972035 		0.995
ELAVL2
M329_0.6 		Homo sapiens RWUUUAUUUWR SELEX
Cook et al.(2011)
783_7972035 		0.995
ELAVL2
M328_0.6 		Homo sapiens MUYCUUUWUWUUY SELEX
Cook et al.(2011)
782_8497264 		0.995
ELAVL4
M315_0.6 		Homo sapiens Sequence logo not available UUUUUUUUUWAAA RIP-chip
Cook et al.(2011)
619_19846595.2 		0.962
ELAVL4
M314_0.6 		Homo sapiens Sequence logo not available KUUUGUUUKKUUU RIP-chip
Cook et al.(2011)
619_19846595.1 		0.962
ELAVL4
M313_0.6 		Homo sapiens Sequence logo not available CYCUCCYUCYCYC RIP-chip
Cook et al.(2011)
619_19846595 		0.962
ELAVL1
M127_0.6 		Homo sapiens UUKRUUU RNAcompete
Ray et al.(2013)
RNCMPT00136 		0.797
ELAVL1
M031_0.6 		Homo sapiens UUDUUUU RNAcompete
Ray et al.(2013)
RNCMPT00032 		0.797
ELAVL1
M327_0.6 		Homo sapiens Sequence logo not available KKNWWDNNNUKNNUUNUNNH RIP-chip
Cook et al.(2011)
714_14981256 		0.797
ELAVL1
M112_0.6 		Homo sapiens UUURKUU RNAcompete
Ray et al.(2013)
RNCMPT00117 		0.797
ELAVL1
M232_0.6 		Homo sapiens UUUUUUK RNAcompete
Ray et al.(2013)
RNCMPT00274 		0.797
ELAVL1
M108_0.6 		Homo sapiens UUWGUUU RNAcompete
Ray et al.(2013)
RNCMPT00112 		0.797
Rbp9
M124_0.6 		Drosophila melanogaster UUDDGUU RNAcompete
Ray et al.(2013)
RNCMPT00132 		0.727
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSMODP00000004833 RRM 70 140
ENSMODP00000004833 RRM 156 224
ENSMODP00000004833 RRM 308 378
ENSMODP00000004837 RRM 46 116
ENSMODP00000004837 RRM 132 200
ENSMODP00000004837 RRM 284 354
ENSMODP00000004839 RRM 41 111
ENSMODP00000004839 RRM 127 195
ENSMODP00000004839 RRM 266 336

Links

Other RRM family RBPs
Other Monodelphis domestica RBPs

192 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Ame_R004766 Ailuropoda melanoleuca Ame_R004766 I 0.995
Ame_R009760 Ailuropoda melanoleuca Ame_R009760 I 0.962
ELAVL2 Anolis carolinensis ENSACAG00000017521 I 1.000
ELAVL3 Anolis carolinensis ENSACAG00000016958 I 0.906
ELAVL4 Anolis carolinensis ENSACAG00000004527 I 0.962
AGAP000965 Anopheles gambiae AGAP000965 I 0.750
amel4_ncbi_hmm5219 Apis mellifera amel4_ncbi_hmm5219 I 0.769
A2VDK5_BOVIN Bos taurus ENSBTAG00000021046 I 0.962
fgenesh2_pg.scaffold_219000066 Branchiostoma floridae fgenesh2_pg.scaffold_219000066 I 0.784
ELAVL4 Callithrix jacchus ENSCJAG00000013725 I 0.962
ELAVL2 Callithrix jacchus ENSCJAG00000008064 I 0.995
ELAVL2 Canis familiaris ENSCAFG00000001688 I 0.995
ELAVL4 Canis familiaris ENSCAFG00000003927 I 0.962
estExt_Genewise1Plus.C_1660036 Capitella teleta estExt_Genewise1Plus.C_1660036 I 0.718
ENSCPOG00000002044 Cavia porcellus ENSCPOG00000002044 I 0.962
ELAVL2 Cavia porcellus ENSCPOG00000010472 I 0.995
ELAVL4 Choloepus hoffmanni ENSCHOG00000002464 I 0.962
ENSCING00000004712 Ciona intestinalis ENSCING00000004712 N 0.000
ENSCSAVG00000003440 Ciona savignyi ENSCSAVG00000003440 I 0.728
CpipJ_CPIJ016143 Culex pipiens CpipJ_CPIJ016143 I 0.746
CPIJ016143 Culex quinquefasciatus CPIJ016143 I 0.746
hug Danio rerio ENSDARG00000016405 I 0.808
elavl2 Danio rerio ENSDARG00000040732 I 0.962
elavl4 Danio rerio ENSDARG00000045639 I 0.939
elavl3 Danio rerio ENSDARG00000014420 I 0.901
fgenesh1_pg.C_scaffold_8000205 Daphnia pulex fgenesh1_pg.C_scaffold_8000205 I 0.742
ELAVL4 Dasypus novemcinctus ENSDNOG00000002932 I 0.962
Elavl2 Dipodomys ordii ENSDORG00000010437 I 0.995
Elavl4 Dipodomys ordii ENSDORG00000012729 I 0.962
Elavl1 Dipodomys ordii ENSDORG00000009158 I 0.797
GF14992 Drosophila ananassae FBgn0092017 I 0.722
GG24901 Drosophila erecta FBgn0117030 I 0.722
GH13638 Drosophila grimshawi FBgn0121114 I 0.731
Rbp9 Drosophila melanogaster FBgn0010263 D 0.741
GI11879 Drosophila mojavensis FBgn0134637 I 0.722
GL26299 Drosophila persimilis FBgn0163881 I 0.736
GA28809-RA Drosophila pseudoobscura FBgn0250168 I 0.722
GM18380 Drosophila sechellia FBgn0173287 I 0.722
GJ13991 Drosophila virilis FBgn0201209 I 0.722
GK14865 Drosophila willistoni FBgn0216870 I 0.722
GE18193 Drosophila yakuba FBgn0235624 I 0.722
ELAVL2 Echinops telfairi ENSETEG00000006134 I 0.995
LOC100051268 Equus caballus ENSECAG00000022284 I 0.962
ELAVL2 Equus caballus ENSECAG00000020142 I 0.995
ELAVL4 Erinaceus europaeus ENSEEUG00000008766 I 0.962
Q9PW22_CHICK Gallus gallus ENSGALG00000010533 I 0.962
ELAVL2 Gallus gallus ENSGALG00000015799 I 0.972
ELAVL2 Gasterosteus aculeatus ENSGACG00000019484 I 0.976
ELAVL3 Gasterosteus aculeatus ENSGACG00000013839 I 0.901
ELAVL4 Gasterosteus aculeatus ENSGACG00000011152 I 0.953
ELAVL4 Gorilla gorilla ENSGGOG00000000634 I 0.962
ELAVL2 Gorilla gorilla ENSGGOG00000003678 I 0.995
187316 Helobdella robusta 187316 N 0.000
ELAVL4 Homo sapiens ENSG00000162374 D 0.962
ELAVL2 Homo sapiens ENSG00000107105 D 0.995
fgenesh2_pg.C_sca_14000012 Lottia gigantea fgenesh2_pg.C_sca_14000012 I 0.755
ELAVL2 Loxodonta africana ENSLAFG00000009938 I 0.995
ELAVL4 Loxodonta africana ENSLAFG00000001087 I 0.962
ELAVL4 Macaca mulatta ENSMMUG00000021933 I 0.962
LOC708195 Macaca mulatta ENSMMUG00000010038 I 0.995
ELAVL4 Macropus eugenii ENSMEUG00000007145 I 0.962
ELAVL3 Macropus eugenii ENSMEUG00000016706 I 0.911
ELAVL4 Meleagris gallopavo ENSMGAG00000010928 I 0.958
ELAVL4 Microcebus murinus ENSMICG00000003286 I 0.962
ELAVL4 Monodelphis domestica ENSMODG00000001300 I 0.962
Elavl1 Mus musculus ENSMUSG00000040028 I 0.797
Elavl4 Mus musculus ENSMUSG00000028546 I 0.962
Elavl2 Mus musculus ENSMUSG00000008489 I 0.995
ELAVL2 Myotis lucifugus ENSMLUG00000014210 I 0.991
ELAVL4 Myotis lucifugus ENSMLUG00000006226 I 0.962
nasonia_NCBI_hmm330804 Nasonia vitripennis nasonia_NCBI_hmm330804 I 0.774
ELAVL4 Ochotona princeps ENSOPRG00000015300 I 0.962
ELAVL1 Ochotona princeps ENSOPRG00000009691 I 0.807
ELAVL2 Ochotona princeps ENSOPRG00000012874 I 0.995
ELAVL4 Oryctolagus cuniculus ENSOCUG00000016262 I 0.962
D7R608_RABIT Oryctolagus cuniculus ENSOCUG00000015871 I 0.807
ELAVL2 Oryctolagus cuniculus ENSOCUG00000005891 I 0.995
ELAVL3 Oryzias latipes ENSORLG00000005379 I 0.893
ELAVL4 Oryzias latipes ENSORLG00000017130 I 0.953
ELAVL2 Oryzias latipes ENSORLG00000004217 I 0.976
ELAVL4 Otolemur garnettii ENSOGAG00000016990 I 0.962
ELAVL2 Pan troglodytes ENSPTRG00000020830 I 0.995
ELAVL4 Pan troglodytes ENSPTRG00000000723 I 0.962
ENSPPYG00000019166 Pongo pygmaeus ENSPPYG00000019166 I 0.995
ENSPPYG00000001367 Pongo pygmaeus ENSPPYG00000001367 I 0.962
ELAVL4 Procavia capensis ENSPCAG00000008215 I 0.962
ELAVL2 Pteropus vampyrus ENSPVAG00000002688 I 0.995
Elavl2 Rattus norvegicus ENSRNOG00000006853 I 0.995
Elavl1 Rattus norvegicus ENSRNOG00000001069 I 0.797
Elavl4 Rattus norvegicus ENSRNOG00000023601 I 0.962
ELAVL4 Sorex araneus ENSSARG00000010733 I 0.962
ELAVL2 Sorex araneus ENSSARG00000005702 I 0.995
ELAVL1 Sus scrofa ENSSSCG00000013592 I 0.802
ELAVL2 Sus scrofa ENSSSCG00000005130 I 0.995
ELAVL4 Taeniopygia guttata ENSTGUG00000008597 I 0.962
ELAVL2 Taeniopygia guttata ENSTGUG00000001349 I 0.967
ELAVL3 Takifugu rubripes ENSTRUG00000010719 I 0.901
ELAVL2 Takifugu rubripes ENSTRUG00000007867 I 0.962
ELAVL4 Takifugu rubripes ENSTRUG00000000523 I 0.948
ELAVL4 Tarsius syrichta ENSTSYG00000004130 I 0.962
ELAVL2 Tetraodon nigroviridis ENSTNIG00000011312 I 0.976
ELAVL4 Tetraodon nigroviridis ENSTNIG00000015485 I 0.948
ELAVL3 Tetraodon nigroviridis ENSTNIG00000018572 I 0.893
ELAVL2 Tursiops truncatus ENSTTRG00000011656 I 0.991
ELAVL2 Vicugna pacos ENSVPAG00000005109 I 0.995
ELAVL4 Vicugna pacos ENSVPAG00000011606 I 0.962
CBF67567 Xenopus laevis CBF67567 I 0.957
CAA59430 Xenopus laevis CAA59430 I 0.991
AAI70539 Xenopus laevis AAI70539 I 1.000
AAI69769 Xenopus laevis AAI69769 I 0.911
AAH99348 Xenopus laevis AAH99348 I 0.957
AAH94189 Xenopus laevis AAH94189 I 1.000
AAA96945 Xenopus laevis AAA96945 I 0.957
AAA96944 Xenopus laevis AAA96944 I 0.911
AAA96943 Xenopus laevis AAA96943 I 0.995
Q91584 Xenopus laevis Q91584 I 0.911
Q91903 Xenopus laevis Q91903 I 0.995
CBU92440 Xenopus laevis CBU92440 I 0.957
elavl4 Xenopus tropicalis ENSXETG00000008680 I 0.957
elavl3 Xenopus tropicalis ENSXETG00000016741 I 0.902