SRSF12 (Monodelphis domestica)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSMODG00000018282 T39194_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
Fusip1
M088_0.6 		Homo sapiens AGAGAVV RNAcompete
Ray et al.(2013)
RNCMPT00090 		0.847
Fusip1
M087_0.6 		Homo sapiens AGAGARR RNAcompete
Ray et al.(2013)
RNCMPT00089 		0.847
Fusip1
M086_0.6 		Homo sapiens ARAGRRR RNAcompete
Ray et al.(2013)
RNCMPT00088 		0.847
Fusip1
M019_0.6 		Homo sapiens AGAGAVM RNAcompete
Ray et al.(2013)
RNCMPT00019 		0.847
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSMODP00000022797 RRM 12 83

Links

Other RRM family RBPs
Other Monodelphis domestica RBPs

76 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Ame_R015561 Ailuropoda melanoleuca Ame_R015561 I 0.000
Ame_R011921 Ailuropoda melanoleuca Ame_R011921 I 0.000
Ame_R007174 Ailuropoda melanoleuca Ame_R007174 I 0.000
Ame_R004658 Ailuropoda melanoleuca Ame_R004658 I 0.000
MEX3A Anolis carolinensis ENSACAG00000003739 N 0.000
MEX3C Anolis carolinensis ENSACAG00000010265 I 0.000
MEX3B Anolis carolinensis ENSACAG00000011072 I 0.000
amel4_ncbi_hmm6985 Apis mellifera amel4_ncbi_hmm6985 I 0.000
BGIBMGA012436 Bombyx mori BGIBMGA012436 I 0.000
MEX3D Bos taurus ENSBTAG00000044028 I 0.000
Q2YDI4_BOVIN Bos taurus ENSBTAG00000014886 I 0.000
MEX3B Bos taurus ENSBTAG00000016630 I 0.000
MEX3A Bos taurus ENSBTAG00000019158 I 0.000
estExt_fgenesh2_pg.C_2010087 Branchiostoma floridae estExt_fgenesh2_pg.C_2010087 I 0.000
MEX3B Callithrix jacchus ENSCJAG00000008043 I 0.000
LOC100410413 Callithrix jacchus ENSCJAG00000007711 I 0.000
LOC100410023 Callithrix jacchus ENSCJAG00000001902 I 0.000
MKNK2 Callithrix jacchus ENSCJAG00000000539 I 0.000
MEX3C Canis familiaris ENSCAFG00000000162 I 0.000
MEX3D Canis familiaris ENSCAFG00000023712 I 0.000
MEX3B Canis familiaris ENSCAFG00000013759 I 0.000
e_gw1.312.50.1 Capitella teleta e_gw1.312.50.1 I 0.000
MEX3A Cavia porcellus ENSCPOG00000020219 I 0.000
ENSCPOG00000008241 Cavia porcellus ENSCPOG00000008241 I 0.000
MEX3C Cavia porcellus ENSCPOG00000009646 I 0.000
MEX3C Choloepus hoffmanni ENSCHOG00000004915 I 0.000
ENSCING00000002603 Ciona intestinalis ENSCING00000002603 I 0.000
MEX3A Danio rerio ENSDARG00000076638 I 0.000
MEX3B Danio rerio ENSDARG00000058369 I 0.000
MEX3C Danio rerio ENSDARG00000068971 I 0.000
MEX3C Dasypus novemcinctus ENSDNOG00000006544 I 0.000
MEX3B Dasypus novemcinctus ENSDNOG00000012736 I 0.000
Mex3c Dipodomys ordii ENSDORG00000007962 I 0.000
Mex3a Dipodomys ordii ENSDORG00000002921 I 0.000
MEX3C Echinops telfairi ENSETEG00000003647 I 0.000
MEX3C Equus caballus ENSECAG00000021727 I 0.000
MEX3B Equus caballus ENSECAG00000013497 I 0.000
LOC100063974 Equus caballus ENSECAG00000007279 N 0.000
MEX3C Erinaceus europaeus ENSEEUG00000010864 I 0.000
MEX3D Felis catus ENSFCAG00000002615 I 0.000
MEX3A Gallus gallus ENSGALG00000014016 N 0.000
MEX3D Gallus gallus ENSGALG00000001106 I 0.000
MEX3A Gasterosteus aculeatus ENSGACG00000013282 N 0.000
MEX3C Gasterosteus aculeatus ENSGACG00000007490 I 0.000
MEX3B Gasterosteus aculeatus ENSGACG00000012530 I 0.000
MEX3B Gorilla gorilla ENSGGOG00000000597 I 0.000
MEX3C Gorilla gorilla ENSGGOG00000014875 I 0.000
MEX3A Gorilla gorilla ENSGGOG00000004513 I 0.000
143355 Helobdella robusta 143355 N 0.000
143653 Helobdella robusta 143653 N 0.000
MEX3C Homo sapiens ENSG00000176624 I 0.000
MEX3B Homo sapiens ENSG00000183496 I 0.000
estExt_Genewise1.C_sca_540218 Lottia gigantea estExt_Genewise1.C_sca_540218 I 0.000
MEX3B Loxodonta africana ENSLAFG00000006027 I 0.000
MEX3C Loxodonta africana ENSLAFG00000027818 I 0.000
MEX3A Loxodonta africana ENSLAFG00000009220 N 0.000
MEX3C Macaca mulatta ENSMMUG00000023652 I 0.000
MEX3A Macaca mulatta ENSMMUG00000022307 I 0.000
MEX3B Macaca mulatta ENSMMUG00000018639 I 0.000
MEX3B Macropus eugenii ENSMEUG00000002402 I 0.000
MEX3C Macropus eugenii ENSMEUG00000015929 I 0.000
MEX3A Meleagris gallopavo ENSMGAG00000015563 N 0.000
MEX3D Meleagris gallopavo ENSMGAG00000002325 I 0.000
MEX3C Microcebus murinus ENSMICG00000005815 I 0.000
MEX3A Microcebus murinus ENSMICG00000002233 I 0.000
MEX3B Monodelphis domestica ENSMODG00000019387 I 0.000
MEX3A Monodelphis domestica ENSMODG00000016954 I 0.000
MEX3C Monodelphis domestica ENSMODG00000011001 I 0.000
Mex3c Mus musculus ENSMUSG00000037253 I 0.000
Mex3b Mus musculus ENSMUSG00000057706 I 0.000
MEX3D Myotis lucifugus ENSMLUG00000017018 N 0.000
MEX3C Myotis lucifugus ENSMLUG00000012585 I 0.000
MEX3A Myotis lucifugus ENSMLUG00000010185 N 0.000
gw.320.9.1 Nematostella vectensis gw.320.9.1 I 0.000
MEX3A Ochotona princeps ENSOPRG00000002937 I 0.000
MEX3B Ochotona princeps ENSOPRG00000009604 I 0.000
MEX3D Ochotona princeps ENSOPRG00000008708 I 0.000
MEX3C Ornithorhynchus anatinus ENSOANG00000008116 I 0.000
ENSOCUG00000012549 Oryctolagus cuniculus ENSOCUG00000012549 I 0.000
MEX3B Oryctolagus cuniculus ENSOCUG00000011603 I 0.000
MEX3A Oryctolagus cuniculus ENSOCUG00000005640 I 0.000
MEX3C Oryzias latipes ENSORLG00000004985 I 0.000
MEX3B Otolemur garnettii ENSOGAG00000016362 I 0.000
MEX3C Pan troglodytes ENSPTRG00000010029 I 0.000
MEX3B Pan troglodytes ENSPTRG00000007373 I 0.000
PHUM418100 Pediculus humanus PHUM418100 I 0.000
ENSPPYG00000006723 Pongo pygmaeus ENSPPYG00000006723 I 0.000
ENSPPYG00000000729 Pongo pygmaeus ENSPPYG00000000729 I 0.000
Ppa-mex-3 Pristionchus pacificus PPA08528 N 0.000
MEX3C Procavia capensis ENSPCAG00000009258 I 0.000
MEX3B Procavia capensis ENSPCAG00000014150 I 0.000
MEX3D Procavia capensis ENSPCAG00000010972 I 0.000
MEX3A Pteropus vampyrus ENSPVAG00000010333 I 0.000
MEX3B Pteropus vampyrus ENSPVAG00000000093 I 0.000
MEX3C Pteropus vampyrus ENSPVAG00000015135 I 0.000
Mex3c Rattus norvegicus ENSRNOG00000015777 I 0.000
D3ZFL6_RAT Rattus norvegicus ENSRNOG00000025142 I 0.000
MEX3A Sorex araneus ENSSARG00000009868 N 0.000
MEX3B Sorex araneus ENSSARG00000006007 I 0.000
MEX3C Sorex araneus ENSSARG00000006940 I 0.000
XP_786425.2 Strongylocentrotus purpuratus XP_786425.2 I 0.000
XP_001175528.1 Strongylocentrotus purpuratus XP_001175528.1 I 0.000
MEX3A Taeniopygia guttata ENSTGUG00000003692 N 0.000
MEX3B Takifugu rubripes ENSTRUG00000000367 I 0.000
MEX3A Takifugu rubripes ENSTRUG00000007796 N 0.000
MEX3D Takifugu rubripes ENSTRUG00000007986 I 0.000
MEX3C Takifugu rubripes ENSTRUG00000011888 I 0.000
MEX3B Tetraodon nigroviridis ENSTNIG00000003398 I 0.000
MEX3A Tetraodon nigroviridis ENSTNIG00000004473 N 0.000
e_gw1.3.1475.1 Trichoplax adhaerens e_gw1.3.1475.1 I 0.000
MEX3C Tupaia belangeri ENSTBEG00000014438 I 0.000
MEX3C Tursiops truncatus ENSTTRG00000004570 I 0.000
MEX3A Tursiops truncatus ENSTTRG00000013346 I 0.000
MEX3C Vicugna pacos ENSVPAG00000003137 I 0.000
A1L3F4 Xenopus laevis A1L3F4 I 0.000
AAI28670 Xenopus laevis AAI28670 I 0.000
AAI30070 Xenopus laevis AAI30070 I 0.000
AAI30196 Xenopus laevis AAI30196 I 0.000
BAH79688 Xenopus laevis BAH79688 I 0.000
mex3a Xenopus tropicalis ENSXETG00000012704 N 0.000
mex3c Xenopus tropicalis ENSXETG00000022367 I 0.000