CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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CELF1
(
Oryctolagus cuniculus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSOCUG00000001311
T39594_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSOCUP00000001131
RRM
45
115
MFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGM
ENSOCUP00000001131
RRM
137
205
LFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCS
ENSOCUP00000001131
RRM
430
500
LFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLK
Links
Other
RRM
family RBPs
Other
Oryctolagus cuniculus
RBPs
92 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
AB01113.1
Alternaria brassicicola
AB01113.1
N
0.000
ARB_05069
Arthroderma benhamiae
ARB_05069
N
0.000
fgenesh1_pg.00082_#_116
Aspergillus carbonarius
fgenesh1_pg.00082_#_116
N
0.000
ACLA_068230
Aspergillus clavatus
CADACLAG00007015
N
0.000
AFLA_130230
Aspergillus flavus
CADAFLAG00010081
N
0.000
AFUA_2G06090
Aspergillus fumigatus
CADAFUAG00003703
N
0.000
ANIA_10941
Aspergillus nidulans
CADANIAG00000536
N
0.000
AO090001000725
Aspergillus oryzae
CADAORAG00000662
N
0.000
ATEG_06805
Aspergillus terreus
CADATEAG00006229
N
0.000
BDBG_05401
Blastomyces dermatitidis
BDBG_05401
N
0.000
BC1G_12993
Botrytis cinerea
BC1G_12993
N
0.000
CHGG_07099
Chaetomium globosum
CHGG_07099
N
0.000
CIMG_00990
Coccidioides immitis
CIMG_00990
N
0.000
CPSG_02224
Coccidioides posadasii
CPSG_02224
N
0.000
estExt_Genewise1Plus.C_240153
Cochliobolus heterostrophus C5
estExt_Genewise1Plus.C_240153
N
0.000
GLRG_03331
Colletotrichum graminicola
GLRG_03331
N
0.000
estExt_Genewise1Plus.C_70091
Cryphonectria parasitica
estExt_Genewise1Plus.C_70091
N
0.000
FGSG_13728
Fusarium graminearum
FGSG_13728
N
0.000
FOXG_05191
Fusarium oxysporum
FOXG_05191
N
0.000
FVEG_02942
Fusarium verticillioides
FVEG_02942
N
0.000
HCAG_03640
Histoplasma capsulatum
HCAG_03640
N
0.000
MGG_06881
Magnaporthe oryzae
MGG_06881
N
0.000
MCYG_04652
Microsporum canis
MCYG_04652
N
0.000
MGYG_08958
Microsporum gypseum
MGYG_08958
N
0.000
gw1.3.2310.1
Myceliophthora thermophila
gw1.3.2310.1
N
0.000
estExt_Genewise1Plus.C_500038
Mycosphaerella fijiensis
estExt_Genewise1Plus.C_500038
N
0.000
gw1.6.1353.1
Mycosphaerella graminicola
gw1.6.1353.1
N
0.000
e_gw1.5.1166.1
Nectria haematococca
e_gw1.5.1166.1
N
0.000
NFIA_082870
Neosartorya fischeri
CADNFIAG00006872
N
0.000
NCU12158
Neurospora crassa
NCU12158
N
0.000
estExt_fgenesh3_pm.C_10926
Neurospora discreta
estExt_fgenesh3_pm.C_10926
N
0.000
estExt_fgenesh1_pg.C_10265
Neurospora tetrasperma
estExt_fgenesh1_pg.C_10265
N
0.000
Pc22g08010
Penicillium chrysogenum
Pc22g08010
N
0.000
PMAA_028640
Penicillium marneffei
PMAA_028640
N
0.000
EAT82933.2
Phaeosphaeria nodorum
EAT82933.2
N
0.000
PredSwiss_ASS2010_857.1
Pneumocystis carinii
PredSwiss_ASS2010_857.1
N
0.000
Pa_2_12560
Podospora anserina
Pa_2_12560
N
0.000
SPOG_01457
Schizosaccharomyces cryophilus
SPOG_01457
N
0.000
SJAG_03853
Schizosaccharomyces japonicus
SJAG_03853
N
0.000
SOCG_02545
Schizosaccharomyces octosporus
SOCG_02545
N
0.000
SPBC660.15
Schizosaccharomyces pombe
SPBC660.15
N
0.000
SS1G_05220
Sclerotinia sclerotiorum
SS1G_05220
N
0.000
estExt_Genewise1.C_23240
Thielavia terrestris
estExt_Genewise1.C_23240
N
0.000
estExt_fgenesh1_pg.C_40107
Trichoderma atroviride
estExt_fgenesh1_pg.C_40107
N
0.000
estExt_GeneWisePlus.C_210250
Trichoderma reesei
estExt_GeneWisePlus.C_210250
N
0.000
estExt_Genewise1Plus.C_230018
Trichoderma virens
estExt_Genewise1Plus.C_230018
N
0.000
TEQG_02438
Trichophyton equinum
TEQG_02438
N
0.000
TERG_03265
Trichophyton rubrum
TERG_03265
N
0.000
TESG_02793
Trichophyton tonsurans
TESG_02793
N
0.000
TRV_06675
Trichophyton verrucosum
TRV_06675
N
0.000
GSTUMT00005496001
Tuber melanosporum
GSTUMT00005496001
N
0.000
UREG_00938
Uncinocarpus reesii
UREG_00938
N
0.000
VDBG_00519
Verticillium albo atrum
VDBG_00519
N
0.000
YALI0C13860g
Yarrowia lipolytica
YALI0C13860g
N
0.000