SRSF10 (Oryzias latipes)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSORLG00000007691 T40150_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
Fusip1
M088_0.6 		Homo sapiens AGAGAVV RNAcompete
Ray et al.(2013)
RNCMPT00090 		0.859
Fusip1
M087_0.6 		Homo sapiens AGAGARR RNAcompete
Ray et al.(2013)
RNCMPT00089 		0.859
Fusip1
M086_0.6 		Homo sapiens ARAGRRR RNAcompete
Ray et al.(2013)
RNCMPT00088 		0.859
Fusip1
M019_0.6 		Homo sapiens AGAGAVM RNAcompete
Ray et al.(2013)
RNCMPT00019 		0.859
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSORLP00000009635 RRM 12 82

Links

Other RRM family RBPs
Other Oryzias latipes RBPs

78 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Ame_R010918 Ailuropoda melanoleuca Ame_R010918 I 0.764
Q3ZBU5_BOVIN Bos taurus ENSBTAG00000008072 I 0.833
ENSCJAG00000021801 Callithrix jacchus ENSCJAG00000021801 I 0.803
LOC100387136 Callithrix jacchus ENSCJAG00000020883 I 0.833
ENSCJAG00000010608 Callithrix jacchus ENSCJAG00000010608 I 0.789
ENSCJAG00000002933 Callithrix jacchus ENSCJAG00000002933 I 0.732
LOC100396874 Callithrix jacchus ENSCJAG00000000822 I 0.859
XM_547294.2 Canis familiaris ENSCAFG00000003095 I 0.819
ENSCAFG00000013066 Canis familiaris ENSCAFG00000013066 I 0.836
ENSCPOG00000024533 Cavia porcellus ENSCPOG00000024533 I 0.836
SRSF12 Cavia porcellus ENSCPOG00000010917 I 0.764
SRSF12 Choloepus hoffmanni ENSCHOG00000013911 I 0.764
ENSCHOG00000004836 Choloepus hoffmanni ENSCHOG00000004836 I 0.833
ENSCHOG00000007773 Choloepus hoffmanni ENSCHOG00000007773 I 0.833
CR293507.1 Danio rerio ENSDARG00000022415 I 0.861
Srsf10 Dipodomys ordii ENSDORG00000009136 I 0.833
SRSF12 Echinops telfairi ENSETEG00000001386 I 0.761
LOC100070965 Equus caballus ENSECAG00000019135 I 0.764
ENSECAG00000023709 Equus caballus ENSECAG00000023709 I 0.750
SRSF12 Erinaceus europaeus ENSEEUG00000011026 I 0.847
ENSEEUG00000014286 Erinaceus europaeus ENSEEUG00000014286 I 0.833
Q5ZMR4_CHICK Gallus gallus ENSGALG00000004133 I 0.819
ENSGACG00000002231 Gasterosteus aculeatus ENSGACG00000002231 I 0.945
ENSGGOG00000000392 Gorilla gorilla ENSGGOG00000000392 I 0.836
SRSF12 Gorilla gorilla ENSGGOG00000024850 I 0.764
SRSF12 Homo sapiens ENSG00000154548 I 0.859
Fusip1 Homo sapiens ENSG00000188529 D 0.833
BX511012.1 Homo sapiens ENSG00000215699 I 0.833
ENSLAFG00000026905 Loxodonta africana ENSLAFG00000026905 I 0.836
SRSF12 Loxodonta africana ENSLAFG00000005458 I 0.764
ENSMMUG00000013784 Macaca mulatta ENSMMUG00000013784 I 0.833
SRSF12 Macaca mulatta ENSMMUG00000014941 I 0.833
ENSMGAG00000005772 Meleagris gallopavo ENSMGAG00000005772 I 0.750
ENSMICG00000000520 Microcebus murinus ENSMICG00000000520 I 0.736
ENSMICG00000017029 Microcebus murinus ENSMICG00000017029 I 0.833
XM_001362581.1 Monodelphis domestica ENSMODG00000013020 I 0.833
SRSF12 Monodelphis domestica ENSMODG00000018282 I 0.833
Srsf12 Mus musculus ENSMUSG00000054679 I 0.859
Srsf10 Mus musculus ENSMUSG00000028676 I 0.833
SRSF12 Myotis lucifugus ENSMLUG00000001545 I 0.750
ENSOPRG00000018613 Ochotona princeps ENSOPRG00000018613 I 0.833
SRSF12 Ochotona princeps ENSOPRG00000016052 I 0.736
SRSF12 Oryctolagus cuniculus ENSOCUG00000000945 I 0.819
ENSOCUG00000021782 Oryctolagus cuniculus ENSOCUG00000021782 I 0.806
ENSOCUG00000024013 Oryctolagus cuniculus ENSOCUG00000024013 I 0.833
ENSOGAG00000015374 Otolemur garnettii ENSOGAG00000015374 I 0.833
SRSF12 Otolemur garnettii ENSOGAG00000006421 I 0.750
XR_020461.1 Pan troglodytes ENSPTRG00000024234 I 0.833
SRSF12 Pan troglodytes ENSPTRG00000018415 I 0.833
ENSPPYG00000001726 Pongo pygmaeus ENSPPYG00000001726 I 0.833
SRSF12 Procavia capensis ENSPCAG00000010020 I 0.847
ENSPCAG00000004059 Procavia capensis ENSPCAG00000004059 I 0.833
SRSF12 Pteropus vampyrus ENSPVAG00000001046 I 0.750
ENSPVAG00000013611 Pteropus vampyrus ENSPVAG00000013611 I 0.833
D3ZB38_RAT Rattus norvegicus ENSRNOG00000007992 I 0.847
Srrp Rattus norvegicus ENSRNOG00000024247 I 0.859
SRSF12 Sorex araneus ENSSARG00000007795 I 0.750
ENSSTOG00000000956 Spermophilus tridecemlineatus ENSSTOG00000000956 I 0.736
SRSF12 Spermophilus tridecemlineatus ENSSTOG00000007170 I 0.750
SRSF12 Sus scrofa ENSSSCG00000004313 I 0.847
FUSIP1 Taeniopygia guttata ENSTGUG00000001178 I 0.792
SRSF10 Takifugu rubripes ENSTRUG00000006317 I 0.973
ENSTSYG00000009439 Tarsius syrichta ENSTSYG00000009439 I 0.736
SRSF12 Tarsius syrichta ENSTSYG00000001269 I 0.750
SLC9A1 Tetraodon nigroviridis ENSTNIG00000005725 I 0.958
ENSTBEG00000015120 Tupaia belangeri ENSTBEG00000015120 I 0.750
ENSTBEG00000008665 Tupaia belangeri ENSTBEG00000008665 I 0.746
SRSF12 Tursiops truncatus ENSTTRG00000003682 I 0.847
ENSTTRG00000016150 Tursiops truncatus ENSTTRG00000016150 I 0.833
SRSF12 Vicugna pacos ENSVPAG00000004175 I 0.847
AAH46695 Xenopus laevis AAH46695 I 0.831
AAH84231 Xenopus laevis AAH84231 I 0.859
srsf12 Xenopus tropicalis ENSXETG00000005385 I 0.800