ENSCJAG00000002933 (Callithrix jacchus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSCJAG00000002933 T35486_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
Fusip1
M019_0.6 		Homo sapiens AGAGAVM RNAcompete
Ray et al.(2013)
RNCMPT00019 		0.778
Fusip1
M088_0.6 		Homo sapiens AGAGAVV RNAcompete
Ray et al.(2013)
RNCMPT00090 		0.778
Fusip1
M087_0.6 		Homo sapiens AGAGARR RNAcompete
Ray et al.(2013)
RNCMPT00089 		0.778
Fusip1
M086_0.6 		Homo sapiens ARAGRRR RNAcompete
Ray et al.(2013)
RNCMPT00088 		0.778
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCJAP00000005309 RRM 1 61

Links

Other RRM family RBPs
Other Callithrix jacchus RBPs

73 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ENSECAG00000023709 Equus caballus ENSECAG00000023709 I 0.903
ENSMGAG00000005772 Meleagris gallopavo ENSMGAG00000005772 I 0.903
ENSSTOG00000000956 Spermophilus tridecemlineatus ENSSTOG00000000956 I 0.887
ENSTSYG00000009439 Tarsius syrichta ENSTSYG00000009439 I 0.871
ENSMICG00000000520 Microcebus murinus ENSMICG00000000520 I 0.859
ENSFCAG00000002888 Felis catus ENSFCAG00000002888 I 0.839
SRSF12 Loxodonta africana ENSLAFG00000005458 I 0.823
SRSF12 Gorilla gorilla ENSGGOG00000024850 I 0.823
LOC100070965 Equus caballus ENSECAG00000019135 I 0.823
SRSF12 Cavia porcellus ENSCPOG00000010917 I 0.823
Ame_R010918 Ailuropoda melanoleuca Ame_R010918 I 0.823
SRSF12 Sorex araneus ENSSARG00000007795 I 0.806
SRSF12 Pteropus vampyrus ENSPVAG00000001046 I 0.806
SRSF12 Tarsius syrichta ENSTSYG00000001269 I 0.806
SRSF12 Spermophilus tridecemlineatus ENSSTOG00000007170 I 0.806
ENSTBEG00000015120 Tupaia belangeri ENSTBEG00000015120 I 0.806
SRSF12 Myotis lucifugus ENSMLUG00000001545 I 0.806
SRSF12 Otolemur garnettii ENSOGAG00000006421 I 0.806
SRSF12 Echinops telfairi ENSETEG00000001386 I 0.803
D3ZB38_RAT Rattus norvegicus ENSRNOG00000007992 I 0.792
SRSF12 Ochotona princeps ENSOPRG00000016052 I 0.790
ENSTBEG00000008665 Tupaia belangeri ENSTBEG00000008665 I 0.787
ENSCJAG00000010608 Callithrix jacchus ENSCJAG00000010608 I 0.783
XM_001362581.1 Monodelphis domestica ENSMODG00000013020 I 0.778
ENSPPYG00000001726 Pongo pygmaeus ENSPPYG00000001726 I 0.778
ENSOGAG00000015374 Otolemur garnettii ENSOGAG00000015374 I 0.778
ENSEEUG00000014286 Erinaceus europaeus ENSEEUG00000014286 I 0.778
SRSF12 Choloepus hoffmanni ENSCHOG00000013911 I 0.773
ENSGGOG00000000392 Gorilla gorilla ENSGGOG00000000392 I 0.767
ENSCPOG00000024533 Cavia porcellus ENSCPOG00000024533 I 0.767
ENSCAFG00000013066 Canis familiaris ENSCAFG00000013066 I 0.767
ENSLAFG00000026905 Loxodonta africana ENSLAFG00000026905 I 0.767
ENSPVAG00000013611 Pteropus vampyrus ENSPVAG00000013611 I 0.764
Srsf10 Mus musculus ENSMUSG00000028676 I 0.764
XR_020461.1 Pan troglodytes ENSPTRG00000024234 I 0.764
LOC100387136 Callithrix jacchus ENSCJAG00000020883 I 0.764
Fusip1 Homo sapiens ENSG00000188529 D 0.764
ENSMICG00000017029 Microcebus murinus ENSMICG00000017029 I 0.764
ENSTTRG00000016150 Tursiops truncatus ENSTTRG00000016150 I 0.764
ENSMMUG00000013784 Macaca mulatta ENSMMUG00000013784 I 0.764
Q3ZBU5_BOVIN Bos taurus ENSBTAG00000008072 I 0.764
ENSCHOG00000004836 Choloepus hoffmanni ENSCHOG00000004836 I 0.764
BX511012.1 Homo sapiens ENSG00000215699 I 0.764
ENSCHOG00000007773 Choloepus hoffmanni ENSCHOG00000007773 I 0.764
ENSOPRG00000018613 Ochotona princeps ENSOPRG00000018613 I 0.764
ENSOCUG00000024013 Oryctolagus cuniculus ENSOCUG00000024013 I 0.764
ENSPCAG00000004059 Procavia capensis ENSPCAG00000004059 I 0.764
Srsf10 Dipodomys ordii ENSDORG00000009136 I 0.750
FUSIP1 Taeniopygia guttata ENSTGUG00000001178 I 0.750
Q5ZMR4_CHICK Gallus gallus ENSGALG00000004133 I 0.750
ENSOCUG00000021782 Oryctolagus cuniculus ENSOCUG00000021782 I 0.750
ENSCJAG00000021801 Callithrix jacchus ENSCJAG00000021801 I 0.746
AAH46695 Xenopus laevis AAH46695 I 0.746
ENSCJAG00000007019 Callithrix jacchus ENSCJAG00000007019 I 0.746
XM_547294.2 Canis familiaris ENSCAFG00000003095 I 0.736
AAH84231 Xenopus laevis AAH84231 I 0.732
SRSF10 Oryzias latipes ENSORLG00000007691 I 0.732
SRSF12 Oryctolagus cuniculus ENSOCUG00000000945 I 0.729
CR293507.1 Danio rerio ENSDARG00000022415 I 0.722
LOC100396874 Callithrix jacchus ENSCJAG00000000822 I 0.718
ENSACAG00000005327 Anolis carolinensis ENSACAG00000005327 I 0.718
SRSF12 Homo sapiens ENSG00000154548 I 0.718
ENSGACG00000002231 Gasterosteus aculeatus ENSGACG00000002231 I 0.712
SRSF10 Takifugu rubripes ENSTRUG00000006317 I 0.712
SRSF12 Pan troglodytes ENSPTRG00000018415 I 0.708
SRSF12 Procavia capensis ENSPCAG00000010020 I 0.708
SRSF12 Vicugna pacos ENSVPAG00000004175 I 0.708
SRSF12 Sus scrofa ENSSSCG00000004313 I 0.708
SRSF12 Tursiops truncatus ENSTTRG00000003682 I 0.708
SRSF12 Erinaceus europaeus ENSEEUG00000011026 I 0.708
SRSF12 Macaca mulatta ENSMMUG00000014941 I 0.708
Srrp Rattus norvegicus ENSRNOG00000024247 I 0.704
Srsf12 Mus musculus ENSMUSG00000054679 I 0.704