HNRNPAB (Procavia capensis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSPCAG00000006760 T40344_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
HNRNPAB
M301_0.6 		Homo sapiens Sequence logo not available ACAAAGACAAA SELEX
Cook et al.(2011)
39_12419250 		0.964
HNRNPAB
M210_0.6 		Tetraodon nigroviridis WRGWUAG RNAcompete
Ray et al.(2013)
RNCMPT00245 		0.814
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSPCAP00000006285 RRM 2 71
ENSPCAP00000006285 RRM 86 155

Links

Other RRM family RBPs
Other Procavia capensis RBPs

120 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Ame_R012484 Ailuropoda melanoleuca Ame_R012484 I 0.964
Ame_R000243 Ailuropoda melanoleuca Ame_R000243 I 0.748
Ame_R000242 Ailuropoda melanoleuca Ame_R000242 I 0.707
HNRNPD Anolis carolinensis ENSACAG00000010342 I 0.748
HNRNPAB Anolis carolinensis ENSACAG00000016946 I 0.907
A4IF81_BOVIN Bos taurus ENSBTAG00000014804 I 0.707
A5D9H5_BOVIN Bos taurus ENSBTAG00000013952 I 0.754
Q3ZC44_BOVIN Bos taurus ENSBTAG00000013627 I 0.971
ENSCJAG00000032456 Callithrix jacchus ENSCJAG00000032456 I 0.921
LOC100412686 Callithrix jacchus ENSCJAG00000015197 I 0.707
LOC100400250 Callithrix jacchus ENSCJAG00000015165 I 0.754
LOC100390818 Callithrix jacchus ENSCJAG00000012235 I 0.850
LOC100404672 Callithrix jacchus ENSCJAG00000005154 I 0.700
LOC100397832 Callithrix jacchus ENSCJAG00000031195 I 0.748
HNRNPD Canis familiaris ENSCAFG00000025045 I 0.754
ENSCAFG00000008940 Canis familiaris ENSCAFG00000008940 I 0.707
HNRNPAB Canis familiaris ENSCAFG00000000241 I 0.957
ENSCPOG00000015619 Cavia porcellus ENSCPOG00000015619 I 0.707
HNRNPAB Cavia porcellus ENSCPOG00000025972 I 0.957
HNRNPD Choloepus hoffmanni ENSCHOG00000000045 I 0.741
ENSCHOG00000000160 Choloepus hoffmanni ENSCHOG00000000160 I 0.707
hnrnpab Danio rerio ENSDARG00000007960 I 0.850
HNRNPAB Danio rerio ENSDARG00000017568 I 0.843
hnrnpd Danio rerio ENSDARG00000059246 I 0.732
HNRNPAB Dasypus novemcinctus ENSDNOG00000013820 I 0.971
ENSDNOG00000003887 Dasypus novemcinctus ENSDNOG00000003887 I 0.707
ENSDORG00000000968 Dipodomys ordii ENSDORG00000000968 I 0.707
Hnrnpd Dipodomys ordii ENSDORG00000012507 I 0.741
HNRNPD Echinops telfairi ENSETEG00000016709 I 0.754
Q6X9Z3_HORSE Equus caballus ENSECAG00000022692 I 0.707
ENSECAG00000018242 Equus caballus ENSECAG00000018242 I 0.971
LOC100069254 Equus caballus ENSECAG00000014816 I 0.711
LOC100060733 Equus caballus ENSECAG00000009344 I 0.754
HNRNPD Erinaceus europaeus ENSEEUG00000007552 I 0.745
HNRNPAB Erinaceus europaeus ENSEEUG00000013226 I 0.721
HNRDL_CHICK Gallus gallus ENSGALG00000023199 I 0.714
Q90626_CHICK Gallus gallus ENSGALG00000014381 I 0.929
Q5ZIH1_CHICK Gallus gallus ENSGALG00000011184 I 0.748
HNRNPAB Gasterosteus aculeatus ENSGACG00000020830 I 0.821
HNRNPAB Gasterosteus aculeatus ENSGACG00000018116 I 0.814
HNRPDL Gorilla gorilla ENSGGOG00000003714 I 0.707
HNRNPAB Gorilla gorilla ENSGGOG00000011692 I 0.964
HNRNPD Gorilla gorilla ENSGGOG00000026760 I 0.754
ENSGGOG00000028444 Gorilla gorilla ENSGGOG00000028444 I 0.864
HNRPDL Homo sapiens ENSG00000152795 I 0.707
HNRNPAB Homo sapiens ENSG00000197451 D 0.964
HNRNPD Homo sapiens ENSG00000138668 I 0.754
HNRNPAB Loxodonta africana ENSLAFG00000001189 I 0.986
ENSLAFG00000008612 Loxodonta africana ENSLAFG00000008612 I 0.707
HNRNPD Loxodonta africana ENSLAFG00000016483 I 0.748
HNRPDL Macaca mulatta ENSMMUG00000015777 I 0.707
HNRNPD Macaca mulatta ENSMMUG00000014030 I 0.754
HNRNPAB Macaca mulatta ENSMMUG00000003996 I 0.957
ENSMEUG00000011454 Macropus eugenii ENSMEUG00000011454 I 0.707
HNRNPAB Macropus eugenii ENSMEUG00000007909 I 0.907
HNRNPD Meleagris gallopavo ENSMGAG00000008051 I 0.748
HNRPDL Meleagris gallopavo ENSMGAG00000008033 I 0.714
HNRNPAB Meleagris gallopavo ENSMGAG00000007727 I 0.929
HNRNPD Microcebus murinus ENSMICG00000010984 I 0.748
HNRPDL Microcebus murinus ENSMICG00000001445 I 0.707
ENSMODG00000011916 Monodelphis domestica ENSMODG00000011916 I 0.707
HNRNPD Monodelphis domestica ENSMODG00000011898 I 0.754
HNRNPAB Monodelphis domestica ENSMODG00000004217 I 0.907
Hnrnpab Mus musculus ENSMUSG00000020358 I 0.950
Hnrpdl Mus musculus ENSMUSG00000029328 I 0.707
Hnrnpd Mus musculus ENSMUSG00000000568 I 0.754
HNRPDL Myotis lucifugus ENSMLUG00000014452 I 0.700
HNRNPD Myotis lucifugus ENSMLUG00000010628 I 0.754
HNRNPAB Ochotona princeps ENSOPRG00000002546 I 0.957
HNRPDL Ochotona princeps ENSOPRG00000007178 I 0.707
HNRNPD Ochotona princeps ENSOPRG00000009336 I 0.754
HNRPDL Ornithorhynchus anatinus ENSOANG00000004651 I 0.707
HNRNPD Ornithorhynchus anatinus ENSOANG00000001932 I 0.741
HNRNPAB Ornithorhynchus anatinus ENSOANG00000004998 I 0.921
HNRNPD Oryctolagus cuniculus ENSOCUG00000001357 I 0.748
HNRNPAB Oryctolagus cuniculus ENSOCUG00000026424 I 0.944
HNRPDL Oryctolagus cuniculus ENSOCUG00000013805 I 0.707
HNRNPAB Oryzias latipes ENSORLG00000005327 I 0.821
HNRNPD Oryzias latipes ENSORLG00000001833 I 0.732
HNRNPAB Oryzias latipes ENSORLG00000015501 I 0.816
HNRNPD Pan troglodytes ENSPTRG00000016215 I 0.754
HNRPDL Pan troglodytes ENSPTRG00000016217 I 0.707
XR_022913.1 Pan troglodytes ENSPTRG00000017601 I 0.964
ENSPPYG00000014885 Pongo pygmaeus ENSPPYG00000014885 I 0.754
ENSPPYG00000016107 Pongo pygmaeus ENSPPYG00000016107 I 0.936
ENSPPYG00000014886 Pongo pygmaeus ENSPPYG00000014886 I 0.707
HNRPDL Procavia capensis ENSPCAG00000011543 I 0.707
HNRNPD Procavia capensis ENSPCAG00000002182 I 0.718
HNRNPAB Pteropus vampyrus ENSPVAG00000016742 I 0.950
HNRNPD Pteropus vampyrus ENSPVAG00000000003 I 0.754
D3ZN89_RAT Rattus norvegicus ENSRNOG00000002270 I 0.707
Hnrpd Rattus norvegicus ENSRNOG00000002292 I 0.746
Hnrnpab Rattus norvegicus ENSRNOG00000003645 I 0.950
HNRNPD Sorex araneus ENSSARG00000006883 I 0.745
HNRPDL Spermophilus tridecemlineatus ENSSTOG00000013979 I 0.707
HNRNPD Spermophilus tridecemlineatus ENSSTOG00000013970 I 0.754
HNRNPAB Sus scrofa ENSSSCG00000001932 I 0.823
HNRNPAB Taeniopygia guttata ENSTGUG00000001168 I 0.929
HNRPDL Taeniopygia guttata ENSTGUG00000002850 I 0.714
HNRNPD Taeniopygia guttata ENSTGUG00000002858 I 0.754
HNRNPD Takifugu rubripes ENSTRUG00000018450 I 0.716
HNRNPAB Takifugu rubripes ENSTRUG00000008411 I 0.829
HNRNPAB Takifugu rubripes ENSTRUG00000000612 I 0.814
HNRNPD Tarsius syrichta ENSTSYG00000010395 I 0.748
HNRNPD Tetraodon nigroviridis ENSTNIG00000013499 I 0.738
HNRNPAB Tetraodon nigroviridis ENSTNIG00000010512 D 0.814
HNRNPAB Tetraodon nigroviridis ENSTNIG00000007596 I 0.829
HNRPDL Tupaia belangeri ENSTBEG00000002817 I 0.707
HNRPDL Tursiops truncatus ENSTTRG00000001793 I 0.707
HNRNPD Tursiops truncatus ENSTTRG00000007592 I 0.754
HNRNPAB Tursiops truncatus ENSTTRG00000010604 I 0.771
HNRNPD Vicugna pacos ENSVPAG00000004374 I 0.748
AAU25946 Xenopus laevis AAU25946 I 0.732
AAH97855 Xenopus laevis AAH97855 I 0.732
AAH74212 Xenopus laevis AAH74212 I 0.879
AAH43814 Xenopus laevis AAH43814 I 0.871
ABV54637 Xenopus laevis ABV54637 I 0.879
hnrpdl Xenopus tropicalis ENSXETG00000023026 I 0.707
hnrnpd Xenopus tropicalis ENSXETG00000012569 I 0.754
hnrnpab Xenopus tropicalis ENSXETG00000003836 I 0.893