ENSRNOG00000039436 (Rattus norvegicus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSRNOG00000039436 T41234_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
HNRNPA1
M312_0.6 		Homo sapiens Sequence logo not available UAGGGW RIP-chip
Cook et al.(2011)
560_17925491 		0.964
HNRNPA1
M271_0.6 		Homo sapiens UAGGGW SELEX
Cook et al.(2011)
23_7510636 		0.964
HNRNPA1
M022_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00022 		0.964
HNRNPA1L2
M023_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00023 		0.943
HNRNPA2B1
M024_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00024 		0.786
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSRNOP00000023343 RRM 12 81
ENSRNOP00000023343 RRM 102 171

Links

Other RRM family RBPs
Other Rattus norvegicus RBPs

319 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Ame_R011792 Ailuropoda melanoleuca Ame_R011792 I 0.964
Ame_R000626 Ailuropoda melanoleuca Ame_R000626 I 0.724
ENSACAG00000007169 Anolis carolinensis ENSACAG00000007169 I 0.950
HNRNPA3 Anolis carolinensis ENSACAG00000012234 I 0.843
HNRNPA2B1 Anolis carolinensis ENSACAG00000012992 I 0.724
LOC538435 Bos taurus ENSBTAG00000038680 I 0.000
LOC785445 Bos taurus ENSBTAG00000025621 I 0.908
LOC781499 Bos taurus ENSBTAG00000021580 I 0.837
ENSBTAG00000020849 Bos taurus ENSBTAG00000020849 I 0.000
ENSBTAG00000011195 Bos taurus ENSBTAG00000011195 I 0.000
ROA2_BOVIN Bos taurus ENSBTAG00000005726 I 0.724
LOC516616 Bos taurus ENSBTAG00000002284 I 0.000
ROA1_BOVIN Bos taurus ENSBTAG00000001553 I 0.964
LOC100397230 Callithrix jacchus ENSCJAG00000018864 I 0.964
LOC100413454 Callithrix jacchus ENSCJAG00000009030 I 0.943
LOC100401647 Callithrix jacchus ENSCJAG00000007908 I 0.724
LOC100397230 Callithrix jacchus ENSCJAG00000004031 I 0.957
ENSCJAG00000019479 Callithrix jacchus ENSCJAG00000019479 I 0.964
ENSCJAG00000021872 Callithrix jacchus ENSCJAG00000021872 I 0.724
LOC100410389 Callithrix jacchus ENSCJAG00000023392 I 0.936
ENSCJAG00000031552 Callithrix jacchus ENSCJAG00000031552 I 0.936
ENSCJAG00000032417 Callithrix jacchus ENSCJAG00000032417 I 0.900
ENSCJAG00000033856 Callithrix jacchus ENSCJAG00000033856 I 0.964
ENSCJAG00000001353 Callithrix jacchus ENSCJAG00000001353 I 0.880
LOC100409067 Callithrix jacchus ENSCJAG00000003245 I 0.943
LOC100411573 Callithrix jacchus ENSCJAG00000023383 I 0.837
XM_534786.2 Canis familiaris ENSCAFG00000006580 I 0.964
XM_855847.1 Canis familiaris ENSCAFG00000006327 I 0.893
ENSCAFG00000006036 Canis familiaris ENSCAFG00000006036 I 0.785
XM_854536.1 Canis familiaris ENSCAFG00000005046 I 0.921
HNRNPA2B1 Canis familiaris ENSCAFG00000002885 I 0.724
ENSCAFG00000015319 Canis familiaris ENSCAFG00000015319 I 0.866
XM_844664.1 Canis familiaris ENSCAFG00000000687 I 0.776
ENSCAFG00000017316 Canis familiaris ENSCAFG00000017316 I 0.823
ENSCAFG00000006784 Canis familiaris ENSCAFG00000006784 I 0.936
ENSCAFG00000011035 Canis familiaris ENSCAFG00000011035 I 0.887
ENSCAFG00000013303 Canis familiaris ENSCAFG00000013303 I 0.772
ENSCAFG00000013497 Canis familiaris ENSCAFG00000013497 I 0.837
ENSCAFG00000014691 Canis familiaris ENSCAFG00000014691 I 0.814
ENSCAFG00000010153 Canis familiaris ENSCAFG00000010153 I 0.950
XM_852631.1 Canis familiaris ENSCAFG00000023680 I 0.921
ENSCPOG00000021077 Cavia porcellus ENSCPOG00000021077 I 0.936
HNRNPA3 Cavia porcellus ENSCPOG00000011301 I 0.837
ENSCPOG00000004251 Cavia porcellus ENSCPOG00000004251 I 0.837
HNRNPA2B1 Choloepus hoffmanni ENSCHOG00000013832 I 0.717
hnrnpa3 Danio rerio ENSDARG00000059351 I 0.786
HNRNPA3 Dasypus novemcinctus ENSDNOG00000019022 I 0.837
HNRNPA2B1 Dasypus novemcinctus ENSDNOG00000012928 I 0.724
ENSDNOG00000009228 Dasypus novemcinctus ENSDNOG00000009228 I 0.964
Hnrnpa2b1 Dipodomys ordii ENSDORG00000005482 I 0.724
HNRNPA2B1 Echinops telfairi ENSETEG00000018577 I 0.724
Q6DTK6_HORSE Equus caballus ENSECAG00000008676 I 0.964
LOC100068539 Equus caballus ENSECAG00000000782 I 0.724
LOC100054206 Equus caballus ENSECAG00000006699 I 0.873
LOC100066794 Equus caballus ENSECAG00000023237 I 0.836
ENSEEUG00000006130 Erinaceus europaeus ENSEEUG00000006130 I 0.964
ENSFCAG00000010150 Felis catus ENSFCAG00000010150 I 0.964
HNRNPA3 Felis catus ENSFCAG00000012146 I 0.836
Q5ZME1_CHICK Gallus gallus ENSGALG00000011036 I 0.724
HNRPA3 Gallus gallus ENSGALG00000009250 I 0.836
ENSGACG00000009435 Gasterosteus aculeatus ENSGACG00000009435 I 0.879
HNRNPA3 Gorilla gorilla ENSGGOG00000006130 I 0.837
HNRNPA2B1 Gorilla gorilla ENSGGOG00000017072 I 0.724
ENSGGOG00000025381 Gorilla gorilla ENSGGOG00000025381 I 0.950
HNRNPA1 Gorilla gorilla ENSGGOG00000003040 I 0.964
ENSG00000215492 Homo sapiens ENSG00000215492 I 0.964
HNRNPA3 Homo sapiens ENSG00000170144 I 0.837
HNRNPA1L2 Homo sapiens ENSG00000139675 D 0.943
HNRNPA1 Homo sapiens ENSG00000135486 D 0.964
HNRNPA2B1 Homo sapiens ENSG00000122566 D 0.724
ENSLAFG00000030769 Loxodonta africana ENSLAFG00000030769 I 0.914
ENSLAFG00000029587 Loxodonta africana ENSLAFG00000029587 I 0.957
HNRNPA2B1 Loxodonta africana ENSLAFG00000006902 I 0.724
ENSLAFG00000026657 Loxodonta africana ENSLAFG00000026657 I 0.936
ENSMMUG00000001858 Macaca mulatta ENSMMUG00000001858 I 0.837
LOC710473 Macaca mulatta ENSMMUG00000007887 I 0.957
LOC710473 Macaca mulatta ENSMMUG00000007928 I 0.943
ROA1_MACMU Macaca mulatta ENSMMUG00000031613 I 0.943
LOC710473 Macaca mulatta ENSMMUG00000012989 I 0.964
LOC710473 Macaca mulatta ENSMMUG00000029402 I 0.957
HNRNPA2B1 Macaca mulatta ENSMMUG00000003619 I 0.724
ENSMEUG00000014479 Macropus eugenii ENSMEUG00000014479 I 0.724
HNRNPA3 Macropus eugenii ENSMEUG00000013622 I 0.837
ENSMEUG00000001084 Macropus eugenii ENSMEUG00000001084 I 0.724
HNRNPA2B1 Meleagris gallopavo ENSMGAG00000010635 I 0.724
HNRNPA3 Meleagris gallopavo ENSMGAG00000009565 I 0.836
ENSMGAG00000007630 Meleagris gallopavo ENSMGAG00000007630 I 0.936
HNRNPA2B1 Monodelphis domestica ENSMODG00000000603 I 0.724
HNRNPA3 Monodelphis domestica ENSMODG00000019803 I 0.837
Hnrnpa2b1 Mus musculus ENSMUSG00000004980 I 0.724
ENSMUSG00000021927 Mus musculus ENSMUSG00000021927 I 0.936
Hnrnpa1 Mus musculus ENSMUSG00000046434 I 0.964
Hnrnpa3 Mus musculus ENSMUSG00000059005 I 0.837
HNRNPA2B1 Myotis lucifugus ENSMLUG00000007578 I 0.724
ENSMLUG00000003232 Myotis lucifugus ENSMLUG00000003232 I 0.950
ENSMLUG00000000648 Myotis lucifugus ENSMLUG00000000648 I 0.964
HNRNPA3 Myotis lucifugus ENSMLUG00000003906 I 0.837
HNRNPA2B1 Ochotona princeps ENSOPRG00000011698 I 0.000
ENSOPRG00000006107 Ochotona princeps ENSOPRG00000006107 I 0.957
HNRNPA2B1 Ornithorhynchus anatinus ENSOANG00000009159 I 0.724
ENSOCUG00000028124 Oryctolagus cuniculus ENSOCUG00000028124 I 0.950
HNRNPA2B1 Oryctolagus cuniculus ENSOCUG00000026859 I 0.724
ENSOCUG00000023674 Oryctolagus cuniculus ENSOCUG00000023674 I 0.964
ENSOCUG00000023444 Oryctolagus cuniculus ENSOCUG00000023444 I 0.957
ENSOCUG00000023322 Oryctolagus cuniculus ENSOCUG00000023322 I 0.950
ENSOCUG00000010985 Oryctolagus cuniculus ENSOCUG00000010985 I 0.950
ENSOCUG00000013350 Oryctolagus cuniculus ENSOCUG00000013350 I 0.964
ENSOCUG00000021006 Oryctolagus cuniculus ENSOCUG00000021006 I 0.929
ENSOCUG00000021007 Oryctolagus cuniculus ENSOCUG00000021007 I 0.950
ENSOCUG00000022568 Oryctolagus cuniculus ENSOCUG00000022568 I 0.957
ENSOCUG00000022668 Oryctolagus cuniculus ENSOCUG00000022668 I 0.936
ENSORLG00000008001 Oryzias latipes ENSORLG00000008001 I 0.864
HNRNPA3 Oryzias latipes ENSORLG00000017561 I 0.775
ENSOGAG00000009945 Otolemur garnettii ENSOGAG00000009945 I 0.943
ENSOGAG00000002398 Otolemur garnettii ENSOGAG00000002398 I 0.740
HNRNPA1L2 Pan troglodytes ENSPTRG00000032520 I 0.964
ROA1_PANTR Pan troglodytes ENSPTRG00000028756 I 0.964
HNRNPA2B1 Pan troglodytes ENSPTRG00000019002 I 0.724
HNRNPA3 Pan troglodytes ENSPTRG00000012676 I 0.837
ROA1_PANTR Pan troglodytes ENSPTRG00000005035 I 0.964
ROA1_PANTR Pan troglodytes ENSPTRG00000031363 I 0.964
ENSPPYG00000017715 Pongo pygmaeus ENSPPYG00000017715 I 0.724
ENSPPYG00000017853 Pongo pygmaeus ENSPPYG00000017853 I 0.921
HNRNPA3 Pteropus vampyrus ENSPVAG00000010380 I 0.837
HNRNPA2B1 Pteropus vampyrus ENSPVAG00000006296 I 0.724
ENSPVAG00000000322 Pteropus vampyrus ENSPVAG00000000322 I 0.964
Hnrnpa1 Rattus norvegicus ENSRNOG00000036839 I 0.964
ENSRNOG00000033182 Rattus norvegicus ENSRNOG00000033182 I 0.915
D4A491_RAT Rattus norvegicus ENSRNOG00000029531 I 0.986
ROA3_RAT Rattus norvegicus ENSRNOG00000027001 I 0.837
Hnrnpa2b1 Rattus norvegicus ENSRNOG00000011175 I 0.724
LOC100360986 Rattus norvegicus ENSRNOG00000001556 I 0.837
ENSSTOG00000009092 Spermophilus tridecemlineatus ENSSTOG00000009092 I 0.710
ENSSTOG00000006202 Spermophilus tridecemlineatus ENSSTOG00000006202 I 0.724
ENSSSCG00000016710 Sus scrofa ENSSSCG00000016710 I 0.000
HNRNPA3 Sus scrofa ENSSSCG00000015988 I 0.837
ENSSSCG00000015836 Sus scrofa ENSSSCG00000015836 I 0.717
ENSSSCG00000000288 Sus scrofa ENSSSCG00000000288 I 0.964
ENSSSCG00000012503 Sus scrofa ENSSSCG00000012503 I 0.000
ENSSSCG00000013557 Sus scrofa ENSSSCG00000013557 I 0.000
ENSSSCG00000013561 Sus scrofa ENSSSCG00000013561 I 0.000
ENSSSCG00000013607 Sus scrofa ENSSSCG00000013607 I 0.000
HNRNPA3 Taeniopygia guttata ENSTGUG00000008996 I 0.836
HNRNPA2B1 Taeniopygia guttata ENSTGUG00000002869 I 0.731
Q1KKU4_FUGRU Takifugu rubripes ENSTRUG00000002190 I 0.836
ENSTNIG00000015047 Tetraodon nigroviridis ENSTNIG00000015047 I 0.821
HNRNPA2B1 Tupaia belangeri ENSTBEG00000003219 I 0.000
ENSTBEG00000008238 Tupaia belangeri ENSTBEG00000008238 I 0.964
HNRNPA3 Tursiops truncatus ENSTTRG00000014225 I 0.837
ENSTTRG00000004505 Tursiops truncatus ENSTTRG00000004505 I 0.964
HNRNPA2B1 Tursiops truncatus ENSTTRG00000000709 I 0.724
HNRNPA2B1 Vicugna pacos ENSVPAG00000010417 I 0.000
CBF67555 Xenopus laevis CBF67555 I 0.871
CBF67577 Xenopus laevis CBF67577 I 0.717
CBF67578 Xenopus laevis CBF67578 I 0.824
CBF67672 Xenopus laevis CBF67672 I 0.886
CBU92428 Xenopus laevis CBU92428 I 0.871
CBU92450 Xenopus laevis CBU92450 I 0.717
CBU92451 Xenopus laevis CBU92451 I 0.824
CBU92546 Xenopus laevis CBU92546 I 0.886
P17130 Xenopus laevis P17130 I 0.871
P51968 Xenopus laevis P51968 I 0.836
P51989 Xenopus laevis P51989 I 0.717
P51990 Xenopus laevis P51990 I 0.703
P51992 Xenopus laevis P51992 I 0.824
AAI69881 Xenopus laevis AAI69881 I 0.824
AAI06633 Xenopus laevis AAI06633 I 0.703
AAA49741 Xenopus laevis AAA49741 I 0.871
AAA49742 Xenopus laevis AAA49742 I 0.871
AAA49948 Xenopus laevis AAA49948 I 0.717
AAA49949 Xenopus laevis AAA49949 I 0.836
AAA49950 Xenopus laevis AAA49950 I 0.824
AAB59951 Xenopus laevis AAB59951 I 0.703
AAH43750 Xenopus laevis AAH43750 I 0.703
AAH45260 Xenopus laevis AAH45260 I 0.886
AAH46692 Xenopus laevis AAH46692 I 0.717
AAH72090 Xenopus laevis AAH72090 I 0.886
hnrnpa1 Xenopus tropicalis ENSXETG00000021277 I 0.893
hnrnpa2b1 Xenopus tropicalis ENSXETG00000012170 I 0.703
hnrnpa3 Xenopus tropicalis ENSXETG00000001806 I 0.850