HNRNPA3 (Oryzias latipes)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSORLG00000017561 T40252_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
HNRNPA1
M312_0.6 		Homo sapiens Sequence logo not available UAGGGW RIP-chip
Cook et al.(2011)
560_17925491 		0.810
HNRNPA1
M271_0.6 		Homo sapiens UAGGGW SELEX
Cook et al.(2011)
23_7510636 		0.810
HNRNPA1
M022_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00022 		0.810
HNRNPA1L2
M023_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00023 		0.789
HNRNPA2B1
M024_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00024 		0.761
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSORLP00000021971 RRM 15 84
ENSORLP00000021971 RRM 106 177
ENSORLP00000021972 RRM 15 84
ENSORLP00000021972 RRM 106 177

Links

Other RRM family RBPs
Other Oryzias latipes RBPs

245 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
HNRNPA3 Gasterosteus aculeatus ENSGACG00000004477 I 0.923
hnrnpa3 Danio rerio ENSDARG00000059351 I 0.901
Q1KKS6_FUGRU Takifugu rubripes ENSTRUG00000017504 I 0.894
HNRNPA3 Tetraodon nigroviridis ENSTNIG00000016958 I 0.887
ENSORLG00000008001 Oryzias latipes ENSORLG00000008001 I 0.831
Q1KKU4_FUGRU Takifugu rubripes ENSTRUG00000002190 I 0.831
CBU92451 Xenopus laevis CBU92451 I 0.824
CBF67578 Xenopus laevis CBF67578 I 0.824
HNRNPA3 Meleagris gallopavo ENSMGAG00000009565 I 0.824
AAI69881 Xenopus laevis AAI69881 I 0.824
AAA49950 Xenopus laevis AAA49950 I 0.824
HNRNPA3 Taeniopygia guttata ENSTGUG00000008996 I 0.824
ENSTNIG00000015047 Tetraodon nigroviridis ENSTNIG00000015047 I 0.824
P51992 Xenopus laevis P51992 I 0.824
HNRPA3 Gallus gallus ENSGALG00000009250 I 0.824
Gm8991 Mus musculus ENSMUSG00000059179 I 0.817
ENSLAFG00000029587 Loxodonta africana ENSLAFG00000029587 I 0.817
hnrnpa1 Xenopus tropicalis ENSXETG00000021277 I 0.817
hnrnpa3 Xenopus tropicalis ENSXETG00000001806 I 0.817
AAH45260 Xenopus laevis AAH45260 I 0.817
ENSGACG00000009435 Gasterosteus aculeatus ENSGACG00000009435 I 0.817
HNRNPA3 Anolis carolinensis ENSACAG00000012234 I 0.817
ENSACAG00000007169 Anolis carolinensis ENSACAG00000007169 I 0.817
HNRNPA3 Sus scrofa ENSSSCG00000015988 I 0.811
LOC100411573 Callithrix jacchus ENSCJAG00000023383 I 0.811
HNRNPA3 Gorilla gorilla ENSGGOG00000006130 I 0.811
ENSMMUG00000001858 Macaca mulatta ENSMMUG00000001858 I 0.811
HNRNPA3 Myotis lucifugus ENSMLUG00000003906 I 0.811
HNRNPA3 Homo sapiens ENSG00000170144 I 0.811
HNRNPA3 Macropus eugenii ENSMEUG00000013622 I 0.811
ENSCPOG00000004251 Cavia porcellus ENSCPOG00000004251 I 0.811
LOC781499 Bos taurus ENSBTAG00000021580 I 0.811
HNRNPA3 Dasypus novemcinctus ENSDNOG00000019022 I 0.811
LOC100360986 Rattus norvegicus ENSRNOG00000001556 I 0.811
HNRNPA3 Pteropus vampyrus ENSPVAG00000010380 I 0.811
Hnrnpa3 Mus musculus ENSMUSG00000059005 I 0.811
HNRNPA3 Tursiops truncatus ENSTTRG00000014225 I 0.811
ENSCAFG00000013497 Canis familiaris ENSCAFG00000013497 I 0.811
HNRNPA3 Monodelphis domestica ENSMODG00000019803 I 0.811
ROA3_RAT Rattus norvegicus ENSRNOG00000027001 I 0.811
HNRNPA3 Pan troglodytes ENSPTRG00000012676 I 0.811
HNRNPA3 Cavia porcellus ENSCPOG00000011301 I 0.811
AAA49949 Xenopus laevis AAA49949 I 0.810
ENSFCAG00000010150 Felis catus ENSFCAG00000010150 I 0.810
ENSDNOG00000009228 Dasypus novemcinctus ENSDNOG00000009228 I 0.810
ROA1_BOVIN Bos taurus ENSBTAG00000001553 I 0.810
Q6DTK6_HORSE Equus caballus ENSECAG00000008676 I 0.810
ENSCJAG00000033856 Callithrix jacchus ENSCJAG00000033856 I 0.810
ENSCJAG00000019479 Callithrix jacchus ENSCJAG00000019479 I 0.810
XM_534786.2 Canis familiaris ENSCAFG00000006580 I 0.810
LOC100397230 Callithrix jacchus ENSCJAG00000018864 I 0.810
LOC100066794 Equus caballus ENSECAG00000023237 I 0.810
P51968 Xenopus laevis P51968 I 0.810
HNRNPA1 Homo sapiens ENSG00000135486 D 0.810
AAH72090 Xenopus laevis AAH72090 I 0.810
HNRNPA3 Felis catus ENSFCAG00000012146 I 0.810
CBF67672 Xenopus laevis CBF67672 I 0.810
CBU92546 Xenopus laevis CBU92546 I 0.810
Ame_R011792 Ailuropoda melanoleuca Ame_R011792 I 0.810
ENSG00000215492 Homo sapiens ENSG00000215492 I 0.810
ENSTTRG00000004505 Tursiops truncatus ENSTTRG00000004505 I 0.810
ROA1_PANTR Pan troglodytes ENSPTRG00000005035 I 0.810
LOC710473 Macaca mulatta ENSMMUG00000029402 I 0.810
ROA1_PANTR Pan troglodytes ENSPTRG00000031363 I 0.810
Hnrnpa1 Rattus norvegicus ENSRNOG00000036839 I 0.810
ROA1_PANTR Pan troglodytes ENSPTRG00000028756 I 0.810
Hnrnpa1 Mus musculus ENSMUSG00000046434 I 0.810
HNRNPA1L2 Pan troglodytes ENSPTRG00000032520 I 0.810
ENSPVAG00000000322 Pteropus vampyrus ENSPVAG00000000322 I 0.810
ENSOCUG00000013350 Oryctolagus cuniculus ENSOCUG00000013350 I 0.810
HNRNPA1 Gorilla gorilla ENSGGOG00000003040 I 0.810
ENSOCUG00000023674 Oryctolagus cuniculus ENSOCUG00000023674 I 0.810
LOC710473 Macaca mulatta ENSMMUG00000012989 I 0.810
ENSMLUG00000000648 Myotis lucifugus ENSMLUG00000000648 I 0.810
ENSTBEG00000008238 Tupaia belangeri ENSTBEG00000008238 I 0.810
ENSLAFG00000026657 Loxodonta africana ENSLAFG00000026657 I 0.810
ENSSSCG00000000288 Sus scrofa ENSSSCG00000000288 I 0.810
ENSMGAG00000007630 Meleagris gallopavo ENSMGAG00000007630 I 0.810
LOC710473 Macaca mulatta ENSMMUG00000007887 I 0.810
HNRNPA3 Oryctolagus cuniculus ENSOCUG00000002743 I 0.804
ENSOCUG00000021006 Oryctolagus cuniculus ENSOCUG00000021006 I 0.803
ENSOPRG00000006107 Ochotona princeps ENSOPRG00000006107 I 0.803
ENSOCUG00000021007 Oryctolagus cuniculus ENSOCUG00000021007 I 0.803
ENSGGOG00000025381 Gorilla gorilla ENSGGOG00000025381 I 0.803
ENSCAFG00000010153 Canis familiaris ENSCAFG00000010153 I 0.803
ENSOCUG00000022568 Oryctolagus cuniculus ENSOCUG00000022568 I 0.803
ENSOCUG00000010985 Oryctolagus cuniculus ENSOCUG00000010985 I 0.803
D3ZXA3_RAT Rattus norvegicus ENSRNOG00000038905 I 0.803
D3ZTB7_RAT Rattus norvegicus ENSRNOG00000031608 I 0.803
ENSOCUG00000023444 Oryctolagus cuniculus ENSOCUG00000023444 I 0.803
LOC100397230 Callithrix jacchus ENSCJAG00000004031 I 0.803
ENSOCUG00000023322 Oryctolagus cuniculus ENSOCUG00000023322 I 0.796
ENSOCUG00000028124 Oryctolagus cuniculus ENSOCUG00000028124 I 0.796
ENSOGAG00000009945 Otolemur garnettii ENSOGAG00000009945 I 0.796
ENSEEUG00000006130 Erinaceus europaeus ENSEEUG00000006130 I 0.796
CBF67555 Xenopus laevis CBF67555 I 0.796
ENSMLUG00000003232 Myotis lucifugus ENSMLUG00000003232 I 0.796
AAA49742 Xenopus laevis AAA49742 I 0.796
AAA49741 Xenopus laevis AAA49741 I 0.796
P17130 Xenopus laevis P17130 I 0.796
CBU92428 Xenopus laevis CBU92428 I 0.796
LOC100413454 Callithrix jacchus ENSCJAG00000009030 I 0.789
LOC100409067 Callithrix jacchus ENSCJAG00000003245 I 0.789
ENSCPOG00000021077 Cavia porcellus ENSCPOG00000021077 I 0.789
LOC100410389 Callithrix jacchus ENSCJAG00000023392 I 0.789
HNRNPA1L2 Homo sapiens ENSG00000139675 D 0.789
LOC710473 Macaca mulatta ENSMMUG00000007928 I 0.789
ROA1_MACMU Macaca mulatta ENSMMUG00000031613 I 0.789
ENSCJAG00000031552 Callithrix jacchus ENSCJAG00000031552 I 0.782
ENSOCUG00000022668 Oryctolagus cuniculus ENSOCUG00000022668 I 0.782
ENSMUSG00000021927 Mus musculus ENSMUSG00000021927 I 0.782
XM_852631.1 Canis familiaris ENSCAFG00000023680 I 0.782
ENSRNOG00000005951 Rattus norvegicus ENSRNOG00000005951 I 0.782
LOC785445 Bos taurus ENSBTAG00000025621 I 0.776
ENSPPYG00000001012 Pongo pygmaeus ENSPPYG00000001012 I 0.776
XM_854536.1 Canis familiaris ENSCAFG00000005046 I 0.775
XM_855847.1 Canis familiaris ENSCAFG00000006327 I 0.775
ENSCJAG00000032417 Callithrix jacchus ENSCJAG00000032417 I 0.775
D4A491_RAT Rattus norvegicus ENSRNOG00000029531 I 0.775
ENSPPYG00000017853 Pongo pygmaeus ENSPPYG00000017853 I 0.775
ENSCAFG00000006784 Canis familiaris ENSCAFG00000006784 I 0.775
ENSRNOG00000039436 Rattus norvegicus ENSRNOG00000039436 I 0.775
ENSLAFG00000030769 Loxodonta africana ENSLAFG00000030769 I 0.775
ENSCJAG00000008584 Callithrix jacchus ENSCJAG00000008584 I 0.769
ENSCJAG00000004902 Callithrix jacchus ENSCJAG00000004902 I 0.769
D3ZNE1_RAT Rattus norvegicus ENSRNOG00000005671 I 0.769
ENSPPYG00000012967 Pongo pygmaeus ENSPPYG00000012967 I 0.769
ENSEEUG00000000494 Erinaceus europaeus ENSEEUG00000000494 I 0.768
ENSRNOG00000013650 Rattus norvegicus ENSRNOG00000013650 I 0.768
ENSTBEG00000016272 Tupaia belangeri ENSTBEG00000016272 I 0.762
ENSOCUG00000022627 Oryctolagus cuniculus ENSOCUG00000022627 I 0.762
D4A2D2_RAT Rattus norvegicus ENSRNOG00000021986 I 0.761
ENSCJAG00000009723 Callithrix jacchus ENSCJAG00000009723 I 0.761
ENSRNOG00000033182 Rattus norvegicus ENSRNOG00000033182 I 0.757
ENSMMUG00000007695 Macaca mulatta ENSMMUG00000007695 I 0.755
ENSCJAG00000000095 Callithrix jacchus ENSCJAG00000000095 I 0.755
ENSTBEG00000012511 Tupaia belangeri ENSTBEG00000012511 I 0.755
LOC100397230 Callithrix jacchus ENSCJAG00000014791 I 0.755
zgc:66127 Danio rerio ENSDARG00000011020 I 0.754
HNRNPA3 Sorex araneus ENSSARG00000007605 I 0.754
ENSCJAG00000016375 Callithrix jacchus ENSCJAG00000016375 I 0.748
ENSCJAG00000010169 Callithrix jacchus ENSCJAG00000010169 I 0.748
ENSGGOG00000025446 Gorilla gorilla ENSGGOG00000025446 I 0.746
hnrnpa1 Danio rerio ENSDARG00000036675 I 0.746
ENSSARG00000008946 Sorex araneus ENSSARG00000008946 I 0.746
Hnrnpa1 Dipodomys ordii ENSDORG00000010628 I 0.746
ENSCAFG00000011035 Canis familiaris ENSCAFG00000011035 I 0.743
Ame_R015370 Ailuropoda melanoleuca Ame_R015370 I 0.741
D3ZX95_RAT Rattus norvegicus ENSRNOG00000027006 I 0.741
ENSDORG00000011155 Dipodomys ordii ENSDORG00000011155 I 0.741
D4AD23_RAT Rattus norvegicus ENSRNOG00000025891 I 0.741
HNRNPA3 Loxodonta africana ENSLAFG00000027712 I 0.741
ENSRNOG00000011100 Rattus norvegicus ENSRNOG00000011100 I 0.741
ENSCAFG00000025274 Canis familiaris ENSCAFG00000025274 I 0.741
XP_541811.1 Canis familiaris ENSCAFG00000006586 I 0.741
ENSSSCG00000015989 Sus scrofa ENSSSCG00000015989 I 0.741
ENSGGOG00000022020 Gorilla gorilla ENSGGOG00000022020 I 0.739
HNRNPA3 Microcebus murinus ENSMICG00000005513 I 0.739
ENSPTRG00000018253 Pan troglodytes ENSPTRG00000018253 I 0.739
ENSRNOG00000030901 Rattus norvegicus ENSRNOG00000030901 I 0.739
ENSCJAG00000001353 Callithrix jacchus ENSCJAG00000001353 I 0.736
ENSCAFG00000015319 Canis familiaris ENSCAFG00000015319 I 0.736
ENSETEG00000015332 Echinops telfairi ENSETEG00000015332 I 0.734
ENSMMUG00000031948 Macaca mulatta ENSMMUG00000031948 I 0.734
ENSCJAG00000035202 Callithrix jacchus ENSCJAG00000035202 I 0.734
ENSCJAG00000020672 Callithrix jacchus ENSCJAG00000020672 I 0.734
ENSRNOG00000021280 Rattus norvegicus ENSRNOG00000021280 I 0.734
ENSCJAG00000006928 Callithrix jacchus ENSCJAG00000006928 I 0.732
ENSCAFG00000019104 Canis familiaris ENSCAFG00000019104 I 0.729
ENSMLUG00000000788 Myotis lucifugus ENSMLUG00000000788 I 0.729
ENSCAFG00000017316 Canis familiaris ENSCAFG00000017316 I 0.728
ENSCAFG00000002059 Canis familiaris ENSCAFG00000002059 I 0.727
ENSCAFG00000014094 Canis familiaris ENSCAFG00000014094 I 0.727
ENSPPYG00000016683 Pongo pygmaeus ENSPPYG00000016683 I 0.725
ENSCAFG00000019118 Canis familiaris ENSCAFG00000019118 I 0.724
ENSCAFG00000004202 Canis familiaris ENSCAFG00000004202 I 0.722
LOC100054206 Equus caballus ENSECAG00000006699 I 0.722
ENSSTOG00000015259 Spermophilus tridecemlineatus ENSSTOG00000015259 I 0.720
Ame_R018030 Ailuropoda melanoleuca Ame_R018030 I 0.720
ENSGGOG00000025827 Gorilla gorilla ENSGGOG00000025827 I 0.720
XP_848548.1 Canis familiaris ENSCAFG00000016313 I 0.720
ENSSSCG00000005428 Sus scrofa ENSSSCG00000005428 I 0.720
ENSCJAG00000033784 Callithrix jacchus ENSCJAG00000033784 I 0.718
ENSCAFG00000007879 Canis familiaris ENSCAFG00000007879 I 0.717
ENSCAFG00000020238 Canis familiaris ENSCAFG00000020238 I 0.715
ENSCAFG00000005308 Canis familiaris ENSCAFG00000005308 I 0.715
ENSCAFG00000007198 Canis familiaris ENSCAFG00000007198 I 0.713
ENSCAFG00000005207 Canis familiaris ENSCAFG00000005207 I 0.713
ENSGGOG00000027879 Gorilla gorilla ENSGGOG00000027879 I 0.713
ENSCJAG00000007250 Callithrix jacchus ENSCJAG00000007250 I 0.713
ENSPCAG00000001867 Procavia capensis ENSPCAG00000001867 I 0.711
ENSCAFG00000024951 Canis familiaris ENSCAFG00000024951 I 0.710
ENSCAFG00000003493 Canis familiaris ENSCAFG00000003493 I 0.708
ENSCAFG00000005164 Canis familiaris ENSCAFG00000005164 I 0.708
HNRNPA2B1 Myotis lucifugus ENSMLUG00000007578 I 0.707
D4A1X0_RAT Rattus norvegicus ENSRNOG00000021254 I 0.707
Hnrnpa2b1 Rattus norvegicus ENSRNOG00000011175 I 0.707
HNRNPA2B1 Ornithorhynchus anatinus ENSOANG00000009159 I 0.707
Hnrnpa2b1 Mus musculus ENSMUSG00000004980 I 0.707
HNRNPA2B1 Monodelphis domestica ENSMODG00000000603 I 0.707
HNRNPA2B1 Macaca mulatta ENSMMUG00000003619 I 0.707
HNRNPA2B1 Oryctolagus cuniculus ENSOCUG00000026859 I 0.707
HNRNPA2B1 Echinops telfairi ENSETEG00000018577 I 0.707
LOC100068539 Equus caballus ENSECAG00000000782 I 0.707
ENSPPYG00000017715 Pongo pygmaeus ENSPPYG00000017715 I 0.707
HNRNPA2B1 Homo sapiens ENSG00000122566 D 0.707
HNRNPA2B1 Meleagris gallopavo ENSMGAG00000010635 I 0.707
Hnrnpa2b1 Dipodomys ordii ENSDORG00000005482 I 0.707
ROA2_BOVIN Bos taurus ENSBTAG00000005726 I 0.707
LOC100401647 Callithrix jacchus ENSCJAG00000007908 I 0.707
ENSCJAG00000021872 Callithrix jacchus ENSCJAG00000021872 I 0.707
HNRNPA2B1 Canis familiaris ENSCAFG00000002885 I 0.707
HNRNPA2B1 Dasypus novemcinctus ENSDNOG00000012928 I 0.707
Q5ZME1_CHICK Gallus gallus ENSGALG00000011036 I 0.707
HNRNPA2B1 Pan troglodytes ENSPTRG00000019002 I 0.707
HNRNPA2B1 Taeniopygia guttata ENSTGUG00000002869 I 0.707
ENSMEUG00000001084 Macropus eugenii ENSMEUG00000001084 I 0.707
ENSMEUG00000014479 Macropus eugenii ENSMEUG00000014479 I 0.707
ENSSTOG00000006202 Spermophilus tridecemlineatus ENSSTOG00000006202 I 0.707
HNRNPA2B1 Tursiops truncatus ENSTTRG00000000709 I 0.707
HNRNPA2B1 Loxodonta africana ENSLAFG00000006902 I 0.707
Ame_R000626 Ailuropoda melanoleuca Ame_R000626 I 0.707
HNRNPA2B1 Pteropus vampyrus ENSPVAG00000006296 I 0.707
HNRNPA2B1 Gorilla gorilla ENSGGOG00000017072 I 0.707
ENSCJAG00000001737 Callithrix jacchus ENSCJAG00000001737 I 0.706
ENSMMUG00000018397 Macaca mulatta ENSMMUG00000018397 I 0.706
ENSSARG00000010620 Sorex araneus ENSSARG00000010620 I 0.704
ENSCAFG00000018186 Canis familiaris ENSCAFG00000018186 I 0.701
XR_010472.1 Macaca mulatta ENSMMUG00000012991 I 0.701
ENSCAFG00000001973 Canis familiaris ENSCAFG00000001973 I 0.701
ENSMODG00000023422 Monodelphis domestica ENSMODG00000023422 I 0.701
XM_001106745.1 Macaca mulatta ENSMMUG00000031809 I 0.701
AAB59951 Xenopus laevis AAB59951 I 0.701
P51989 Xenopus laevis P51989 I 0.701
P51990 Xenopus laevis P51990 I 0.701
HNRNPA2B1 Anolis carolinensis ENSACAG00000012992 I 0.701
HNRNPA2B1 Choloepus hoffmanni ENSCHOG00000013832 I 0.701
CBU92450 Xenopus laevis CBU92450 I 0.701
CBF67577 Xenopus laevis CBF67577 I 0.701
AAA49948 Xenopus laevis AAA49948 I 0.701
AAH43750 Xenopus laevis AAH43750 I 0.701
AAH46692 Xenopus laevis AAH46692 I 0.701
AAI06633 Xenopus laevis AAI06633 I 0.701
hnrnpa2b1 Xenopus tropicalis ENSXETG00000012170 I 0.701