CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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MYEF2
(
Tarsius syrichta
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSTSYG00000010575
T42489_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSTSYP00000009698
RRM
101
171
VFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAEGKSRGCGVVEFKDEEFVKKALETMNKYDLSGRPLN
ENSTSYP00000009698
RRM
234
293
IFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAIXXXX
ENSTSYP00000009698
RRM
523
591
IFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKMENGKSKGCGTVRFDSPESAEKACRIMNGIKISGREID
Links
Other
RRM
family RBPs
Other
Tarsius syrichta
RBPs
66 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
Ame_R005511
Ailuropoda melanoleuca
Ame_R005511
N
0.933
Ame_R017061
Ailuropoda melanoleuca
Ame_R017061
N
0.711
MYEF2
Anolis carolinensis
ENSACAG00000004806
N
0.886
Q3SYX2_BOVIN
Bos taurus
ENSBTAG00000021039
N
0.711
A6QQP0_BOVIN
Bos taurus
ENSBTAG00000008771
N
0.933
MYEF2
Callithrix jacchus
ENSCJAG00000001875
N
0.929
HNRNPM
Callithrix jacchus
ENSCJAG00000010802
N
0.706
MYEF2
Canis familiaris
ENSCAFG00000014008
N
0.933
HNRNPM
Canis familiaris
ENSCAFG00000018524
N
0.711
MYEF2
Cavia porcellus
ENSCPOG00000010584
N
0.886
HNRNPM
Cavia porcellus
ENSCPOG00000015182
N
0.711
HNRNPM
Choloepus hoffmanni
ENSCHOG00000013627
N
0.711
myef2
Danio rerio
ENSDARG00000059398
N
0.810
MYEF2
Dasypus novemcinctus
ENSDNOG00000004667
N
0.720
HNRNPM
Dasypus novemcinctus
ENSDNOG00000012157
N
0.749
ENSDORG00000015835
Dipodomys ordii
ENSDORG00000015835
N
0.929
HNRNPM
Echinops telfairi
ENSETEG00000019712
N
0.711
HNRNPM
Equus caballus
ENSECAG00000023868
N
0.711
LOC100070256
Equus caballus
ENSECAG00000005741
N
0.933
HNRNPM
Felis catus
ENSFCAG00000015218
N
0.714
Q5ZL80_CHICK
Gallus gallus
ENSGALG00000000377
N
0.703
Q5ZHY2_CHICK
Gallus gallus
ENSGALG00000004905
N
0.933
MYEF2
Gasterosteus aculeatus
ENSGACG00000016759
N
0.829
HNRNPM
Gorilla gorilla
ENSGGOG00000003498
N
0.711
MYEF2
Gorilla gorilla
ENSGGOG00000014968
N
0.929
HNRNPM
Homo sapiens
ENSG00000099783
N
0.711
MYEF2
Homo sapiens
ENSG00000104177
N
0.933
HNRNPM
Loxodonta africana
ENSLAFG00000013603
N
0.711
MYEF2
Loxodonta africana
ENSLAFG00000012990
N
0.929
HNRNPM
Macaca mulatta
ENSMMUG00000018806
N
0.711
MYEF2
Macaca mulatta
ENSMMUG00000018834
N
0.933
HNRNPM
Macropus eugenii
ENSMEUG00000004789
N
0.749
MYEF2
Meleagris gallopavo
ENSMGAG00000006915
N
0.933
XM_001365870.1
Monodelphis domestica
ENSMODG00000003801
N
0.711
MYEF2
Monodelphis domestica
ENSMODG00000002744
N
0.848
Myef2
Mus musculus
ENSMUSG00000027201
N
0.924
Hnrnpm
Mus musculus
ENSMUSG00000059208
N
0.706
Gm9833
Mus musculus
ENSMUSG00000049230
N
0.724
HNRNPM
Myotis lucifugus
ENSMLUG00000006696
N
0.706
MYEF2
Ochotona princeps
ENSOPRG00000003919
N
0.810
ENSOCUG00000000552
Oryctolagus cuniculus
ENSOCUG00000000552
N
0.711
ENSOCUG00000024611
Oryctolagus cuniculus
ENSOCUG00000024611
N
0.711
MYEF2
Oryctolagus cuniculus
ENSOCUG00000013043
N
0.933
MYEF2
Oryzias latipes
ENSORLG00000002730
N
0.829
MYEF2
Otolemur garnettii
ENSOGAG00000010907
N
0.829
MYEF2
Pan troglodytes
ENSPTRG00000007042
N
0.933
HNRNPM
Pan troglodytes
ENSPTRG00000010424
N
0.711
ENSPPYG00000006452
Pongo pygmaeus
ENSPPYG00000006452
N
0.933
ENSPPYG00000009506
Pongo pygmaeus
ENSPPYG00000009506
N
0.711
MYEF2
Procavia capensis
ENSPCAG00000016660
N
0.933
HNRNPM
Procavia capensis
ENSPCAG00000009678
N
0.701
MYEF2
Pteropus vampyrus
ENSPVAG00000004102
N
0.710
Myef2
Rattus norvegicus
ENSRNOG00000005258
N
0.929
Hnrpm
Rattus norvegicus
ENSRNOG00000007921
N
0.711
MYEF2
Sorex araneus
ENSSARG00000003264
N
0.814
MYEF2
Spermophilus tridecemlineatus
ENSSTOG00000007740
N
0.719
MYEF2
Sus scrofa
ENSSSCG00000004661
N
0.924
HNRNPM
Sus scrofa
ENSSSCG00000013602
N
0.711
MYEF2
Taeniopygia guttata
ENSTGUG00000007130
N
0.929
MYEF2
Takifugu rubripes
ENSTRUG00000016967
N
0.836
MYEF2
Tetraodon nigroviridis
ENSTNIG00000009526
N
0.848
HNRNPM
Tursiops truncatus
ENSTTRG00000009769
N
0.711
MYEF2
Tursiops truncatus
ENSTTRG00000008076
N
0.933
MYEF2
Vicugna pacos
ENSVPAG00000004721
N
0.933
AAI08588
Xenopus laevis
AAI08588
N
0.838
myef2
Xenopus tropicalis
ENSXETG00000018412
N
0.843