CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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CELF1
(
Tursiops truncatus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSTTRG00000014157
T42660_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSTTRP00000013426
RRM
18
88
MFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGM
ENSTTRP00000013426
RRM
110
178
LFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCS
ENSTTRP00000013426
RRM
403
473
LFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLK
Links
Other
RRM
family RBPs
Other
Tursiops truncatus
RBPs
92 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
Ame_R005511
Ailuropoda melanoleuca
Ame_R005511
N
0.000
Ame_R017061
Ailuropoda melanoleuca
Ame_R017061
N
0.000
MYEF2
Anolis carolinensis
ENSACAG00000004806
N
0.000
A6QQP0_BOVIN
Bos taurus
ENSBTAG00000008771
N
0.000
Q3SYX2_BOVIN
Bos taurus
ENSBTAG00000021039
N
0.000
MYEF2
Callithrix jacchus
ENSCJAG00000001875
N
0.000
HNRNPM
Callithrix jacchus
ENSCJAG00000010802
N
0.000
MYEF2
Canis familiaris
ENSCAFG00000014008
N
0.000
HNRNPM
Canis familiaris
ENSCAFG00000018524
N
0.000
HNRNPM
Cavia porcellus
ENSCPOG00000015182
N
0.000
MYEF2
Cavia porcellus
ENSCPOG00000010584
N
0.000
HNRNPM
Choloepus hoffmanni
ENSCHOG00000013627
N
0.000
myef2
Danio rerio
ENSDARG00000059398
N
0.000
ENSDORG00000015835
Dipodomys ordii
ENSDORG00000015835
N
0.000
HNRNPM
Echinops telfairi
ENSETEG00000019712
N
0.000
HNRNPM
Equus caballus
ENSECAG00000023868
N
0.000
LOC100070256
Equus caballus
ENSECAG00000005741
N
0.000
Q5ZL80_CHICK
Gallus gallus
ENSGALG00000000377
N
0.000
Q5ZHY2_CHICK
Gallus gallus
ENSGALG00000004905
N
0.000
MYEF2
Gasterosteus aculeatus
ENSGACG00000016759
N
0.000
HNRNPM
Gorilla gorilla
ENSGGOG00000003498
N
0.000
MYEF2
Gorilla gorilla
ENSGGOG00000014968
N
0.000
MYEF2
Homo sapiens
ENSG00000104177
N
0.000
HNRNPM
Homo sapiens
ENSG00000099783
N
0.000
MYEF2
Loxodonta africana
ENSLAFG00000012990
N
0.000
HNRNPM
Loxodonta africana
ENSLAFG00000013603
N
0.000
HNRNPM
Macaca mulatta
ENSMMUG00000018806
N
0.000
MYEF2
Macaca mulatta
ENSMMUG00000018834
N
0.000
MYEF2
Meleagris gallopavo
ENSMGAG00000006915
N
0.000
XM_001365870.1
Monodelphis domestica
ENSMODG00000003801
N
0.000
Hnrnpm
Mus musculus
ENSMUSG00000059208
N
0.000
Gm9833
Mus musculus
ENSMUSG00000049230
N
0.000
Myef2
Mus musculus
ENSMUSG00000027201
N
0.000
HNRNPM
Myotis lucifugus
ENSMLUG00000006696
N
0.000
MYEF2
Ochotona princeps
ENSOPRG00000003919
N
0.000
MYEF2
Oryctolagus cuniculus
ENSOCUG00000013043
N
0.000
ENSOCUG00000024611
Oryctolagus cuniculus
ENSOCUG00000024611
N
0.000
ENSOCUG00000000552
Oryctolagus cuniculus
ENSOCUG00000000552
N
0.000
MYEF2
Oryzias latipes
ENSORLG00000002730
N
0.000
MYEF2
Otolemur garnettii
ENSOGAG00000010907
N
0.000
HNRNPM
Pan troglodytes
ENSPTRG00000010424
N
0.000
MYEF2
Pan troglodytes
ENSPTRG00000007042
N
0.000
ENSPPYG00000009506
Pongo pygmaeus
ENSPPYG00000009506
N
0.000
ENSPPYG00000006452
Pongo pygmaeus
ENSPPYG00000006452
N
0.000
HNRNPM
Procavia capensis
ENSPCAG00000009678
N
0.000
MYEF2
Procavia capensis
ENSPCAG00000016660
N
0.000
Myef2
Rattus norvegicus
ENSRNOG00000005258
N
0.000
Hnrpm
Rattus norvegicus
ENSRNOG00000007921
N
0.000
HNRNPM
Sorex araneus
ENSSARG00000000267
N
0.000
MYEF2
Sorex araneus
ENSSARG00000003264
N
0.000
MYEF2
Spermophilus tridecemlineatus
ENSSTOG00000007740
N
0.000
MYEF2
Sus scrofa
ENSSSCG00000004661
N
0.000
HNRNPM
Sus scrofa
ENSSSCG00000013602
N
0.000
MYEF2
Taeniopygia guttata
ENSTGUG00000007130
N
0.000
MYEF2
Takifugu rubripes
ENSTRUG00000016967
N
0.000
MYEF2
Tarsius syrichta
ENSTSYG00000010575
N
0.000
MYEF2
Tetraodon nigroviridis
ENSTNIG00000009526
N
0.000
HNRNPM
Tupaia belangeri
ENSTBEG00000008718
N
0.000
MYEF2
Tursiops truncatus
ENSTTRG00000008076
N
0.000
HNRNPM
Tursiops truncatus
ENSTTRG00000009769
N
0.000
MYEF2
Vicugna pacos
ENSVPAG00000004721
N
0.000
AAI08588
Xenopus laevis
AAI08588
N
0.000
myef2
Xenopus tropicalis
ENSXETG00000018412
N
0.000