ENSXETG00000007102 (Xenopus tropicalis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSXETG00000007102 T42847_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
ENSXETG00000007102
M243_0.6		 Xenopus tropicalis MAAAAAG RNAcompete
Ray et al.(2013)
RNCMPT00289 		(Direct)

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
ENSGALG00000000814
M242_0.6 		Gallus gallus MMAAAWY RNAcompete
Ray et al.(2013)
RNCMPT00288 		0.910
ENSXETG00000018075
M236_0.6 		Xenopus tropicalis MAAAWWD RNAcompete
Ray et al.(2013)
RNCMPT00281 		0.880
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M243_0.6 RRM 51 119
M243_0.6 RRM 132 199
M243_0.6 RRM 227 289

RNA Binding Domains

Protein ID Domain From To Sequence
ENSXETP00000015452 RRM 70 138
ENSXETP00000015452 RRM 151 218
ENSXETP00000015452 RRM 246 308

Links

Other RRM family RBPs
Other Xenopus tropicalis RBPs

84 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Ame_R011496 Ailuropoda melanoleuca Ame_R011496 I 0.881
Ame_R001024 Ailuropoda melanoleuca Ame_R001024 I 0.920
SYNCRIP Anolis carolinensis ENSACAG00000015234 I 0.876
HNRNPR Anolis carolinensis ENSACAG00000017593 I 0.920
A3KMV6_BOVIN Bos taurus ENSBTAG00000016578 I 0.920
A7E355_BOVIN Bos taurus ENSBTAG00000006672 I 0.881
HNRNPR Callithrix jacchus ENSCJAG00000005512 I 0.920
ENSCJAG00000013031 Callithrix jacchus ENSCJAG00000013031 I 0.816
SYNCRIP Callithrix jacchus ENSCJAG00000015352 I 0.881
SYNCRIP Canis familiaris ENSCAFG00000003024 I 0.881
HNRNPR Canis familiaris ENSCAFG00000013308 I 0.912
SYNCRIP Cavia porcellus ENSCPOG00000012415 I 0.881
ENSCPOG00000009653 Cavia porcellus ENSCPOG00000009653 I 0.920
HNRNPR Choloepus hoffmanni ENSCHOG00000005090 I 0.907
syncripl Danio rerio ENSDARG00000026723 I 0.842
syncrip Danio rerio ENSDARG00000040184 I 0.866
SYNCRIP Dasypus novemcinctus ENSDNOG00000018345 I 0.725
Syncrip Dipodomys ordii ENSDORG00000005217 I 0.745
SYNCRIP Echinops telfairi ENSETEG00000020109 I 0.881
LOC100070472 Equus caballus ENSECAG00000012464 I 0.731
HNRNPR Equus caballus ENSECAG00000013733 I 0.920
HNRNPR Erinaceus europaeus ENSEEUG00000010120 I 0.882
HNRNPR Felis catus ENSFCAG00000019123 I 0.705
Q5ZLH7_CHICK Gallus gallus ENSGALG00000015830 I 0.876
ENSGALG00000000814 Gallus gallus ENSGALG00000000814 D 0.910
HNRNPR Gasterosteus aculeatus ENSGACG00000003202 I 0.856
SYNCRIP Gasterosteus aculeatus ENSGACG00000009124 I 0.856
SYNCRIP Gasterosteus aculeatus ENSGACG00000011665 I 0.856
SYNCRIP Gorilla gorilla ENSGGOG00000012898 I 0.881
HNRNPR Gorilla gorilla ENSGGOG00000013250 I 0.920
SYNCRIP Homo sapiens ENSG00000135316 I 0.881
HNRNPR Homo sapiens ENSG00000125944 I 0.920
SYNCRIP Loxodonta africana ENSLAFG00000018172 I 0.881
HNRNPR Loxodonta africana ENSLAFG00000012793 I 0.920
HNRNPR Macaca mulatta ENSMMUG00000010970 I 0.920
SYNCRIP Macaca mulatta ENSMMUG00000012575 I 0.881
HNRNPR Macropus eugenii ENSMEUG00000003769 I 0.761
HNRNPR Meleagris gallopavo ENSMGAG00000001000 I 0.910
SYNCRIP Meleagris gallopavo ENSMGAG00000013690 I 0.876
SYNCRIP Microcebus murinus ENSMICG00000007192 I 0.881
XM_001366708.1 Monodelphis domestica ENSMODG00000018345 I 0.881
HNRNPR Monodelphis domestica ENSMODG00000016144 I 0.915
XM_001362737.1 Monodelphis domestica ENSMODG00000000609 I 0.881
Syncrip Mus musculus ENSMUSG00000032423 I 0.876
Hnrnpr Mus musculus ENSMUSG00000066037 I 0.920
SYNCRIP Myotis lucifugus ENSMLUG00000006919 I 0.881
HNRNPR Myotis lucifugus ENSMLUG00000007582 I 0.867
HNRNPR Ochotona princeps ENSOPRG00000014561 I 0.799
HNRNPR Ornithorhynchus anatinus ENSOANG00000003961 I 0.920
SYNCRIP Ornithorhynchus anatinus ENSOANG00000010099 I 0.871
SYNCRIP Oryctolagus cuniculus ENSOCUG00000000601 I 0.881
HNRNPR Oryctolagus cuniculus ENSOCUG00000006686 I 0.912
SYNCRIP Oryzias latipes ENSORLG00000009190 I 0.861
SYNCRIP Oryzias latipes ENSORLG00000014840 I 0.847
HNRNPR Oryzias latipes ENSORLG00000002515 I 0.843
HNRNPR Otolemur garnettii ENSOGAG00000009179 I 0.892
SYNCRIP Otolemur garnettii ENSOGAG00000001721 I 0.745
XR_022081.1 Pan troglodytes ENSPTRG00000018393 I 0.881
HNRNPR Pan troglodytes ENSPTRG00000000324 I 0.907
ENSPPYG00000016819 Pongo pygmaeus ENSPPYG00000016819 I 0.881
ENSPPYG00000001744 Pongo pygmaeus ENSPPYG00000001744 I 0.920
HNRNPR Procavia capensis ENSPCAG00000010462 I 0.761
SYNCRIP Pteropus vampyrus ENSPVAG00000011888 I 0.881
HNRNPR Pteropus vampyrus ENSPVAG00000014804 I 0.907
ENSRNOG00000033356 Rattus norvegicus ENSRNOG00000033356 I 0.731
Syncrip Rattus norvegicus ENSRNOG00000000204 I 0.876
Hnrnpr Rattus norvegicus ENSRNOG00000011910 I 0.920
HNRNPR Sorex araneus ENSSARG00000001732 I 0.907
SYNCRIP Sorex araneus ENSSARG00000005967 I 0.881
SYNCRIP Sus scrofa ENSSSCG00000004294 I 0.881
HNRNPR Taeniopygia guttata ENSTGUG00000000880 I 0.910
SYNCRIP Takifugu rubripes ENSTRUG00000014766 I 0.847
HNRNPR Takifugu rubripes ENSTRUG00000008817 I 0.851
SYNCRIP Takifugu rubripes ENSTRUG00000005365 I 0.847
SYNCRIP Tarsius syrichta ENSTSYG00000013305 I 0.881
HNRNPR Tetraodon nigroviridis ENSTNIG00000017576 I 0.856
SYNCRIP Tetraodon nigroviridis ENSTNIG00000017299 I 0.847
SYNCRIP Tetraodon nigroviridis ENSTNIG00000002821 I 0.847
HNRNPR Tupaia belangeri ENSTBEG00000002251 I 0.907
HNRNPR Tursiops truncatus ENSTTRG00000007752 I 0.838
SYNCRIP Vicugna pacos ENSVPAG00000001061 I 0.881
AAH70529 Xenopus laevis AAH70529 I 0.881
AAI61702 Xenopus laevis AAI61702 I 0.985
ENSXETG00000018075 Xenopus tropicalis ENSXETG00000018075 D 0.871