GA19094-RA (Drosophila pseudoobscura)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 FBgn0079092 T43166_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
orb2
M120_0.6 		Drosophila melanogaster KUUUKKK RNAcompete
Ray et al.(2013)
RNCMPT00126 		1.000
CPEB2
M012_0.6 		Homo sapiens CHUUUUU RNAcompete
Ray et al.(2013)
RNCMPT00012 		0.902
CPEB4
M149_0.6 		Homo sapiens UUUUUU RNAcompete
Ray et al.(2013)
RNCMPT00158 		0.870
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
FBpp0286892 RRM 461 526
FBpp0286892 RRM 569 633

Links

Other RRM family RBPs
Other Drosophila pseudoobscura RBPs

149 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Ame_R004815 Ailuropoda melanoleuca Ame_R004815 I 0.890
Ame_R003954 Ailuropoda melanoleuca Ame_R003954 I 0.876
Ame_R004097 Ailuropoda melanoleuca Ame_R004097 I 0.917
CPEB3 Anolis carolinensis ENSACAG00000006335 I 0.876
ENSACAG00000012015 Anolis carolinensis ENSACAG00000012015 I 0.917
CPEB4 Anolis carolinensis ENSACAG00000015039 I 0.890
CPEB2 Bos taurus ENSBTAG00000019847 I 0.917
CPEB3 Bos taurus ENSBTAG00000015450 I 0.876
A7Z087_BOVIN Bos taurus ENSBTAG00000009995 I 0.890
gw.572.2.1 Branchiostoma floridae gw.572.2.1 I 0.902
LOC100402805 Callithrix jacchus ENSCJAG00000012227 I 0.917
LOC100392612 Callithrix jacchus ENSCJAG00000008495 I 0.876
CPEB4 Callithrix jacchus ENSCJAG00000019166 I 0.890
CPEB3 Canis familiaris ENSCAFG00000007423 I 0.876
CPEB4 Canis familiaris ENSCAFG00000016761 I 0.883
CPEB2 Canis familiaris ENSCAFG00000015372 I 0.917
CPEB4 Cavia porcellus ENSCPOG00000015530 I 0.890
CPEB2 Cavia porcellus ENSCPOG00000001180 I 0.917
CPEB2 Choloepus hoffmanni ENSCHOG00000003058 I 0.917
CPEB3 Choloepus hoffmanni ENSCHOG00000000272 I 0.870
cpeb3 Danio rerio ENSDARG00000060103 I 0.870
CPEB4 Danio rerio ENSDARG00000060495 I 0.882
CPEB2 Dasypus novemcinctus ENSDNOG00000016610 N 0.000
Cpeb2 Dipodomys ordii ENSDORG00000015311 I 0.917
CPEB3 Echinops telfairi ENSETEG00000000111 I 0.876
CPEB3 Equus caballus ENSECAG00000000077 I 0.870
LOC100058918 Equus caballus ENSECAG00000016921 I 0.890
CPEB2 Equus caballus ENSECAG00000008722 I 0.917
CPEB4 Erinaceus europaeus ENSEEUG00000010887 I 0.890
CPEB2 Gallus gallus ENSGALG00000014516 I 0.917
CPEB3 Gallus gallus ENSGALG00000006912 I 0.876
CPEB4 Gallus gallus ENSGALG00000014074 I 0.877
CPEB4 Gasterosteus aculeatus ENSGACG00000020430 I 0.882
CPEB4 Gasterosteus aculeatus ENSGACG00000018422 I 0.882
CPEB3 Gasterosteus aculeatus ENSGACG00000002944 I 0.854
CPEB3 Gorilla gorilla ENSGGOG00000016441 I 0.876
CPEB4 Gorilla gorilla ENSGGOG00000010097 I 0.890
CPEB2 Gorilla gorilla ENSGGOG00000004449 I 0.917
CPEB4 Homo sapiens ENSG00000113742 D 0.890
CPEB3 Homo sapiens ENSG00000107864 I 0.876
CPEB2 Homo sapiens ENSG00000137449 D 0.917
e_gw1.21.3.1 Lottia gigantea e_gw1.21.3.1 I 0.863
CPEB3 Loxodonta africana ENSLAFG00000018716 I 0.876
CPEB2 Loxodonta africana ENSLAFG00000007142 I 0.917
CPEB4 Loxodonta africana ENSLAFG00000016030 I 0.890
CPEB4 Macaca mulatta ENSMMUG00000019926 I 0.882
CPEB3 Macaca mulatta ENSMMUG00000015050 I 0.876
CPEB2 Macaca mulatta ENSMMUG00000001384 I 0.917
CPEB3 Macropus eugenii ENSMEUG00000009948 I 0.869
CPEB2 Macropus eugenii ENSMEUG00000008074 I 0.917
CPEB3 Meleagris gallopavo ENSMGAG00000009148 I 0.876
CPEB2 Meleagris gallopavo ENSMGAG00000005200 I 0.917
CPEB4 Meleagris gallopavo ENSMGAG00000003660 I 0.877
CPEB3 Microcebus murinus ENSMICG00000017842 I 0.876
CPEB3 Monodelphis domestica ENSMODG00000006673 I 0.876
CPEB4 Monodelphis domestica ENSMODG00000006036 I 0.890
CPEB2 Monodelphis domestica ENSMODG00000001149 I 0.917
Cpeb4 Mus musculus ENSMUSG00000020300 I 0.890
Cpeb2 Mus musculus ENSMUSG00000039782 I 0.917
Cpeb3 Mus musculus ENSMUSG00000039652 I 0.876
CPEB4 Myotis lucifugus ENSMLUG00000014640 I 0.890
CPEB3 Myotis lucifugus ENSMLUG00000009474 I 0.713
nasonia_NCBI_hmm338954 Nasonia vitripennis nasonia_NCBI_hmm338954 I 0.920
CPEB4 Ochotona princeps ENSOPRG00000002868 I 0.890
CPEB3 Ornithorhynchus anatinus ENSOANG00000015723 I 0.870
CPEB4 Ornithorhynchus anatinus ENSOANG00000003990 I 0.877
CPEB2 Ornithorhynchus anatinus ENSOANG00000003552 I 0.909
CPEB3 Oryctolagus cuniculus ENSOCUG00000010454 I 0.876
CPEB4 Oryctolagus cuniculus ENSOCUG00000008971 I 0.890
CPEB2 Oryctolagus cuniculus ENSOCUG00000007950 I 0.917
CPEB4 Oryzias latipes ENSORLG00000007328 I 0.882
CPEB4 Oryzias latipes ENSORLG00000001711 I 0.882
CPEB3 Oryzias latipes ENSORLG00000000726 I 0.869
CPEB2 Otolemur garnettii ENSOGAG00000011237 I 0.917
CPEB4 Otolemur garnettii ENSOGAG00000004243 I 0.890
CPEB3 Otolemur garnettii ENSOGAG00000002002 I 0.000
CPEB3 Pan troglodytes ENSPTRG00000002753 I 0.876
XR_025355.1 Pan troglodytes ENSPTRG00000015924 I 0.917
CPEB4 Pan troglodytes ENSPTRG00000017545 I 0.890
ENSPPYG00000016058 Pongo pygmaeus ENSPPYG00000016058 I 0.890
ENSPPYG00000014613 Pongo pygmaeus ENSPPYG00000014613 I 0.917
ENSPPYG00000002481 Pongo pygmaeus ENSPPYG00000002481 I 0.876
CPEB3 Procavia capensis ENSPCAG00000012417 I 0.803
CPEB4 Procavia capensis ENSPCAG00000007021 I 0.890
CPEB4 Pteropus vampyrus ENSPVAG00000007863 I 0.890
Cpeb3 Rattus norvegicus ENSRNOG00000020689 I 0.876
Cpeb4 Rattus norvegicus ENSRNOG00000033169 I 0.890
Sjc_0029950 Schistosoma japonicum Sjc_0029950 I 0.000
CPEB4 Sorex araneus ENSSARG00000013389 I 0.875
CPEB3 Sorex araneus ENSSARG00000001994 I 0.870
CPEB4 Spermophilus tridecemlineatus ENSSTOG00000006077 I 0.883
CPEB3 Sus scrofa ENSSSCG00000010468 I 0.876
CPEB2 Sus scrofa ENSSSCG00000008736 I 0.917
CPEB4 Taeniopygia guttata ENSTGUG00000000329 I 0.890
CPEB3 Taeniopygia guttata ENSTGUG00000008988 I 0.876
CPEB2 Taeniopygia guttata ENSTGUG00000009822 I 0.917
CPEB4 Takifugu rubripes ENSTRUG00000010947 I 0.890
CPEB3 Takifugu rubripes ENSTRUG00000011309 I 0.862
CPEB4 Takifugu rubripes ENSTRUG00000010692 I 0.882
CPEB4 Tarsius syrichta ENSTSYG00000003136 I 0.890
CPEB4 Tetraodon nigroviridis ENSTNIG00000018221 I 0.000
CPEB4 Tetraodon nigroviridis ENSTNIG00000017077 I 0.882
CPEB3 Tetraodon nigroviridis ENSTNIG00000004021 I 0.855
CPEB3 Tupaia belangeri ENSTBEG00000013125 I 0.876
CPEB4 Tupaia belangeri ENSTBEG00000001429 I 0.890
CPEB2 Tursiops truncatus ENSTTRG00000003940 I 0.917
CPEB3 Vicugna pacos ENSVPAG00000002144 I 0.713
ADH10187 Xenopus laevis ADH10187 I 0.890
cpeb3 Xenopus tropicalis ENSXETG00000012190 I 0.876