CPEB3 (Monodelphis domestica)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSMODG00000006673 T39096_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
CPEB4
M149_0.6 		Homo sapiens UUUUUU RNAcompete
Ray et al.(2013)
RNCMPT00158 		0.963
CPEB2
M012_0.6 		Homo sapiens CHUUUUU RNAcompete
Ray et al.(2013)
RNCMPT00012 		0.956
orb2
M120_0.6 		Drosophila melanogaster KUUUKKK RNAcompete
Ray et al.(2013)
RNCMPT00126 		0.862
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSMODP00000008270 RRM 393 458
ENSMODP00000008270 RRM 501 570
ENSMODP00000036078 RRM 376 441
ENSMODP00000036078 RRM 484 553

Links

Other RRM family RBPs
Other Monodelphis domestica RBPs

153 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
CPEB3 Taeniopygia guttata ENSTGUG00000008988 I 1.000
CPEB3 Macaca mulatta ENSMMUG00000015050 I 1.000
cpeb3 Xenopus tropicalis ENSXETG00000012190 I 1.000
CPEB3 Tupaia belangeri ENSTBEG00000013125 I 1.000
CPEB3 Sus scrofa ENSSSCG00000010468 I 1.000
CPEB3 Pan troglodytes ENSPTRG00000002753 I 1.000
Cpeb3 Rattus norvegicus ENSRNOG00000020689 I 1.000
CPEB3 Loxodonta africana ENSLAFG00000018716 I 1.000
CPEB3 Microcebus murinus ENSMICG00000017842 I 1.000
CPEB3 Gallus gallus ENSGALG00000006912 I 1.000
CPEB3 Bos taurus ENSBTAG00000015450 I 1.000
CPEB3 Canis familiaris ENSCAFG00000007423 I 1.000
LOC100392612 Callithrix jacchus ENSCJAG00000008495 I 1.000
CPEB3 Anolis carolinensis ENSACAG00000006335 I 1.000
Ame_R003954 Ailuropoda melanoleuca Ame_R003954 I 1.000
CPEB3 Meleagris gallopavo ENSMGAG00000009148 I 1.000
CPEB3 Homo sapiens ENSG00000107864 I 1.000
ENSPPYG00000002481 Pongo pygmaeus ENSPPYG00000002481 I 1.000
CPEB3 Gorilla gorilla ENSGGOG00000016441 I 1.000
Cpeb3 Mus musculus ENSMUSG00000039652 I 1.000
CPEB3 Oryctolagus cuniculus ENSOCUG00000010454 I 1.000
CPEB3 Sorex araneus ENSSARG00000001994 I 0.993
CPEB3 Choloepus hoffmanni ENSCHOG00000000272 I 0.993
CPEB3 Equus caballus ENSECAG00000000077 I 0.993
CPEB3 Ornithorhynchus anatinus ENSOANG00000015723 I 0.993
CPEB3 Macropus eugenii ENSMEUG00000009948 I 0.993
CPEB3 Echinops telfairi ENSETEG00000000111 I 0.993
cpeb3 Danio rerio ENSDARG00000060103 I 0.971
CPEB3 Oryzias latipes ENSORLG00000000726 I 0.971
CPEB3 Takifugu rubripes ENSTRUG00000011309 I 0.957
CPEB3 Tetraodon nigroviridis ENSTNIG00000004021 I 0.957
CPEB3 Gasterosteus aculeatus ENSGACG00000002944 I 0.956
CPEB2 Oryctolagus cuniculus ENSOCUG00000007950 I 0.956
CPEB2 Gorilla gorilla ENSGGOG00000004449 I 0.956
CPEB2 Loxodonta africana ENSLAFG00000007142 I 0.956
CPEB2 Tursiops truncatus ENSTTRG00000003940 I 0.956
Cpeb2 Dipodomys ordii ENSDORG00000015311 I 0.956
CPEB2 Monodelphis domestica ENSMODG00000001149 I 0.956
CPEB2 Homo sapiens ENSG00000137449 D 0.956
CPEB2 Gallus gallus ENSGALG00000014516 I 0.956
Ame_R004097 Ailuropoda melanoleuca Ame_R004097 I 0.956
CPEB2 Choloepus hoffmanni ENSCHOG00000003058 I 0.956
CPEB2 Equus caballus ENSECAG00000008722 I 0.956
LOC100402805 Callithrix jacchus ENSCJAG00000012227 I 0.956
CPEB2 Cavia porcellus ENSCPOG00000001180 I 0.956
CPEB2 Canis familiaris ENSCAFG00000015372 I 0.956
ENSPPYG00000014613 Pongo pygmaeus ENSPPYG00000014613 I 0.956
CPEB2 Macaca mulatta ENSMMUG00000001384 I 0.956
Cpeb2 Mus musculus ENSMUSG00000039782 I 0.956
CPEB2 Bos taurus ENSBTAG00000019847 I 0.956
CPEB2 Meleagris gallopavo ENSMGAG00000005200 I 0.956
CPEB2 Macropus eugenii ENSMEUG00000008074 I 0.956
CPEB2 Otolemur garnettii ENSOGAG00000011237 I 0.956
CPEB2 Sus scrofa ENSSSCG00000008736 I 0.956
XR_025355.1 Pan troglodytes ENSPTRG00000015924 I 0.956
CPEB2 Taeniopygia guttata ENSTGUG00000009822 I 0.956
CPEB4 Taeniopygia guttata ENSTGUG00000000329 I 0.949
CPEB4 Anolis carolinensis ENSACAG00000015039 I 0.949
CPEB4 Oryctolagus cuniculus ENSOCUG00000008971 I 0.949
CPEB4 Ochotona princeps ENSOPRG00000002868 I 0.949
CPEB4 Monodelphis domestica ENSMODG00000006036 I 0.949
CPEB4 Homo sapiens ENSG00000113742 D 0.949
CPEB4 Tupaia belangeri ENSTBEG00000001429 I 0.949
ADH10187 Xenopus laevis ADH10187 I 0.949
CPEB4 Erinaceus europaeus ENSEEUG00000010887 I 0.949
CPEB4 Tarsius syrichta ENSTSYG00000003136 I 0.949
CPEB4 Spermophilus tridecemlineatus ENSSTOG00000006077 I 0.949
LOC100058918 Equus caballus ENSECAG00000016921 I 0.949
A7Z087_BOVIN Bos taurus ENSBTAG00000009995 I 0.949
ENSPPYG00000016058 Pongo pygmaeus ENSPPYG00000016058 I 0.949
CPEB4 Cavia porcellus ENSCPOG00000015530 I 0.949
CPEB4 Gorilla gorilla ENSGGOG00000010097 I 0.949
CPEB4 Otolemur garnettii ENSOGAG00000004243 I 0.949
CPEB4 Procavia capensis ENSPCAG00000007021 I 0.949
CPEB4 Loxodonta africana ENSLAFG00000016030 I 0.949
CPEB4 Myotis lucifugus ENSMLUG00000014640 I 0.949
CPEB4 Pan troglodytes ENSPTRG00000017545 I 0.949
CPEB4 Callithrix jacchus ENSCJAG00000019166 I 0.949
Cpeb4 Rattus norvegicus ENSRNOG00000033169 I 0.949
Ame_R004815 Ailuropoda melanoleuca Ame_R004815 I 0.949
CPEB4 Pteropus vampyrus ENSPVAG00000007863 I 0.949
Cpeb4 Mus musculus ENSMUSG00000020300 I 0.949
CPEB2 Ornithorhynchus anatinus ENSOANG00000003552 I 0.949
ENSACAG00000012015 Anolis carolinensis ENSACAG00000012015 I 0.949
CPEB4 Canis familiaris ENSCAFG00000016761 I 0.942
CPEB4 Danio rerio ENSDARG00000060495 I 0.942
CPEB4 Macaca mulatta ENSMMUG00000019926 I 0.942
CPEB4 Gasterosteus aculeatus ENSGACG00000020430 I 0.942
CPEB4 Takifugu rubripes ENSTRUG00000010692 I 0.942
CPEB4 Oryzias latipes ENSORLG00000001711 I 0.942
CPEB4 Gallus gallus ENSGALG00000014074 I 0.935
CPEB4 Meleagris gallopavo ENSMGAG00000003660 I 0.935
CPEB4 Ornithorhynchus anatinus ENSOANG00000003990 I 0.935
CPEB4 Sorex araneus ENSSARG00000013389 I 0.934
CPEB4 Tetraodon nigroviridis ENSTNIG00000017077 I 0.934
CPEB4 Gasterosteus aculeatus ENSGACG00000018422 I 0.934
CPEB4 Takifugu rubripes ENSTRUG00000010947 I 0.934
CPEB4 Oryzias latipes ENSORLG00000007328 I 0.934
gw.572.2.1 Branchiostoma floridae gw.572.2.1 I 0.927
CPEB2 Tetraodon nigroviridis ENSTNIG00000017678 I 0.920
CPEB2 Oryzias latipes ENSORLG00000016222 I 0.920
fgenesh2_pg.scaffold_143000050 Branchiostoma floridae fgenesh2_pg.scaffold_143000050 I 0.920
CPEB3 Pteropus vampyrus ENSPVAG00000007664 I 0.919
nasonia_NCBI_hmm338954 Nasonia vitripennis nasonia_NCBI_hmm338954 I 0.912
CPEB2 Takifugu rubripes ENSTRUG00000013956 I 0.912
CPEB2 Pteropus vampyrus ENSPVAG00000007732 I 0.912
CPEB2 Gasterosteus aculeatus ENSGACG00000013966 I 0.906
CPEB3 Procavia capensis ENSPCAG00000012417 I 0.904
XP_001187928.1 Strongylocentrotus purpuratus XP_001187928.1 I 0.899
XP_789277.1 Strongylocentrotus purpuratus XP_789277.1 I 0.899
DGIL_AUG5s10609g1t1 Acyrtosiphon pisum DGIL_AUG5s10609g1t1 I 0.897
D3ZHK8_RAT Rattus norvegicus ENSRNOG00000005043 I 0.896
ISCW010113 Ixodes scapularis ISCW010113 I 0.891
cpeb2 Xenopus tropicalis ENSXETG00000020324 I 0.891
GF10140 Drosophila ananassae FBgn0087181 I 0.883
GH16131 Drosophila grimshawi FBgn0123602 I 0.882
GK17460 Drosophila willistoni FBgn0219459 I 0.876
GL20808 Drosophila persimilis FBgn0158403 I 0.876
GJ12289 Drosophila virilis FBgn0199538 I 0.876
GE21274 Drosophila yakuba FBgn0238542 I 0.876
BGIBMGA001827 Bombyx mori BGIBMGA001827 I 0.876
GI12400 Drosophila mojavensis FBgn0135157 I 0.876
GA19094-RA Drosophila pseudoobscura FBgn0079092 I 0.876
GG15051 Drosophila erecta FBgn0107305 I 0.876
orb2 Drosophila melanogaster FBgn0262573 D 0.876
PHUM335520 Pediculus humanus PHUM335520 I 0.875
e_gw1.24.94.1 Capitella teleta e_gw1.24.94.1 I 0.875
amel4_ncbi_hmm4978 Apis mellifera amel4_ncbi_hmm4978 I 0.862
CPEB4 Vicugna pacos ENSVPAG00000010897 I 0.861
CPEB2 Vicugna pacos ENSVPAG00000006185 I 0.860
CPEB2 Sorex araneus ENSSARG00000010559 I 0.860
e_gw1.21.3.1 Lottia gigantea e_gw1.21.3.1 I 0.854
CPEB2 Danio rerio ENSDARG00000052604 I 0.853
e_gw.6.76.1 Nematostella vectensis e_gw.6.76.1 I 0.847
CPEB4 Echinops telfairi ENSETEG00000012142 I 0.841
ENSCING00000001633 Ciona intestinalis ENSCING00000001633 I 0.836
XP_002159261.1 Hydra magnipapillata XP_002159261.1 I 0.833
CPEB3 Tursiops truncatus ENSTTRG00000012334 I 0.830
PASA_GEN_0800168 Daphnia pulex PASA_GEN_0800168 I 0.829
111676 Helobdella robusta 111676 I 0.804
fgeneshTA2_pg.C_scaffold_8000081 Trichoplax adhaerens fgeneshTA2_pg.C_scaffold_8000081 I 0.804
AGAP002296 Anopheles gambiae AGAP002296 I 0.797
CPEB4 Sus scrofa ENSSSCG00000016981 I 0.777
CPEB3 Vicugna pacos ENSVPAG00000002144 I 0.774
CPEB3 Myotis lucifugus ENSMLUG00000009474 I 0.774
SNAPOd2T00005918001 Oikopleura dioica SNAPOd2T00005918001 I 0.768
CPEB3 Otolemur garnettii ENSOGAG00000002002 I 0.757
cpeb4 Xenopus tropicalis ENSXETG00000012731 I 0.746
CPEB3 Tarsius syrichta ENSTSYG00000003928 I 0.743
CPEB4 Tetraodon nigroviridis ENSTNIG00000018221 I 0.737
AAEL012065 Aedes aegypti AAEL012065 I 0.719
79994 Helobdella robusta 79994 I 0.707