CPEB3 (Equus caballus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSECAG00000000077 T36550_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
CPEB4
M149_0.6 		Homo sapiens UUUUUU RNAcompete
Ray et al.(2013)
RNCMPT00158 		0.956
CPEB2
M012_0.6 		Homo sapiens CHUUUUU RNAcompete
Ray et al.(2013)
RNCMPT00012 		0.949
orb2
M120_0.6 		Drosophila melanogaster KUUUKKK RNAcompete
Ray et al.(2013)
RNCMPT00126 		0.856
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSECAP00000000067 RRM 126 191
ENSECAP00000000067 RRM 234 304

Links

Other RRM family RBPs
Other Equus caballus RBPs

153 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
CPEB3 Ornithorhynchus anatinus ENSOANG00000015723 I 1.000
CPEB3 Choloepus hoffmanni ENSCHOG00000000272 I 1.000
CPEB3 Sorex araneus ENSSARG00000001994 I 1.000
CPEB3 Oryctolagus cuniculus ENSOCUG00000010454 I 0.993
CPEB3 Pan troglodytes ENSPTRG00000002753 I 0.993
ENSPPYG00000002481 Pongo pygmaeus ENSPPYG00000002481 I 0.993
Cpeb3 Mus musculus ENSMUSG00000039652 I 0.993
CPEB3 Microcebus murinus ENSMICG00000017842 I 0.993
CPEB3 Macaca mulatta ENSMMUG00000015050 I 0.993
CPEB3 Monodelphis domestica ENSMODG00000006673 I 0.993
Cpeb3 Rattus norvegicus ENSRNOG00000020689 I 0.993
CPEB3 Sus scrofa ENSSSCG00000010468 I 0.993
CPEB3 Bos taurus ENSBTAG00000015450 I 0.993
CPEB3 Canis familiaris ENSCAFG00000007423 I 0.993
LOC100392612 Callithrix jacchus ENSCJAG00000008495 I 0.993
CPEB3 Anolis carolinensis ENSACAG00000006335 I 0.993
Ame_R003954 Ailuropoda melanoleuca Ame_R003954 I 0.993
CPEB3 Tupaia belangeri ENSTBEG00000013125 I 0.993
cpeb3 Xenopus tropicalis ENSXETG00000012190 I 0.993
CPEB3 Meleagris gallopavo ENSMGAG00000009148 I 0.993
CPEB3 Taeniopygia guttata ENSTGUG00000008988 I 0.993
CPEB3 Homo sapiens ENSG00000107864 I 0.993
CPEB3 Gorilla gorilla ENSGGOG00000016441 I 0.993
CPEB3 Gallus gallus ENSGALG00000006912 I 0.993
CPEB3 Loxodonta africana ENSLAFG00000018716 I 0.993
CPEB3 Echinops telfairi ENSETEG00000000111 I 0.985
CPEB3 Macropus eugenii ENSMEUG00000009948 I 0.985
cpeb3 Danio rerio ENSDARG00000060103 I 0.978
CPEB3 Takifugu rubripes ENSTRUG00000011309 I 0.964
CPEB3 Tetraodon nigroviridis ENSTNIG00000004021 I 0.964
CPEB3 Oryzias latipes ENSORLG00000000726 I 0.964
CPEB3 Gasterosteus aculeatus ENSGACG00000002944 I 0.949
Ame_R004097 Ailuropoda melanoleuca Ame_R004097 I 0.949
CPEB2 Homo sapiens ENSG00000137449 D 0.949
CPEB2 Otolemur garnettii ENSOGAG00000011237 I 0.949
CPEB2 Sus scrofa ENSSSCG00000008736 I 0.949
XR_025355.1 Pan troglodytes ENSPTRG00000015924 I 0.949
CPEB2 Taeniopygia guttata ENSTGUG00000009822 I 0.949
CPEB2 Equus caballus ENSECAG00000008722 I 0.949
CPEB2 Macropus eugenii ENSMEUG00000008074 I 0.949
CPEB2 Gallus gallus ENSGALG00000014516 I 0.949
CPEB2 Tursiops truncatus ENSTTRG00000003940 I 0.949
ENSPPYG00000014613 Pongo pygmaeus ENSPPYG00000014613 I 0.949
CPEB2 Bos taurus ENSBTAG00000019847 I 0.949
CPEB2 Oryctolagus cuniculus ENSOCUG00000007950 I 0.949
CPEB2 Choloepus hoffmanni ENSCHOG00000003058 I 0.949
LOC100402805 Callithrix jacchus ENSCJAG00000012227 I 0.949
CPEB2 Monodelphis domestica ENSMODG00000001149 I 0.949
CPEB2 Loxodonta africana ENSLAFG00000007142 I 0.949
CPEB2 Cavia porcellus ENSCPOG00000001180 I 0.949
Cpeb2 Mus musculus ENSMUSG00000039782 I 0.949
CPEB2 Meleagris gallopavo ENSMGAG00000005200 I 0.949
CPEB2 Canis familiaris ENSCAFG00000015372 I 0.949
CPEB2 Gorilla gorilla ENSGGOG00000004449 I 0.949
CPEB2 Macaca mulatta ENSMMUG00000001384 I 0.949
Cpeb2 Dipodomys ordii ENSDORG00000015311 I 0.949
CPEB4 Spermophilus tridecemlineatus ENSSTOG00000006077 I 0.942
CPEB4 Cavia porcellus ENSCPOG00000015530 I 0.942
CPEB4 Tupaia belangeri ENSTBEG00000001429 I 0.942
CPEB4 Taeniopygia guttata ENSTGUG00000000329 I 0.942
LOC100058918 Equus caballus ENSECAG00000016921 I 0.942
CPEB4 Anolis carolinensis ENSACAG00000015039 I 0.942
A7Z087_BOVIN Bos taurus ENSBTAG00000009995 I 0.942
CPEB4 Erinaceus europaeus ENSEEUG00000010887 I 0.942
ADH10187 Xenopus laevis ADH10187 I 0.942
CPEB4 Homo sapiens ENSG00000113742 D 0.942
Ame_R004815 Ailuropoda melanoleuca Ame_R004815 I 0.942
CPEB4 Callithrix jacchus ENSCJAG00000019166 I 0.942
CPEB4 Tarsius syrichta ENSTSYG00000003136 I 0.942
Cpeb4 Mus musculus ENSMUSG00000020300 I 0.942
CPEB4 Pteropus vampyrus ENSPVAG00000007863 I 0.942
CPEB4 Gorilla gorilla ENSGGOG00000010097 I 0.942
CPEB4 Ochotona princeps ENSOPRG00000002868 I 0.942
CPEB4 Otolemur garnettii ENSOGAG00000004243 I 0.942
CPEB4 Pan troglodytes ENSPTRG00000017545 I 0.942
CPEB4 Oryctolagus cuniculus ENSOCUG00000008971 I 0.942
CPEB4 Monodelphis domestica ENSMODG00000006036 I 0.942
CPEB4 Myotis lucifugus ENSMLUG00000014640 I 0.942
ENSPPYG00000016058 Pongo pygmaeus ENSPPYG00000016058 I 0.942
CPEB4 Procavia capensis ENSPCAG00000007021 I 0.942
Cpeb4 Rattus norvegicus ENSRNOG00000033169 I 0.942
CPEB4 Loxodonta africana ENSLAFG00000016030 I 0.942
CPEB2 Ornithorhynchus anatinus ENSOANG00000003552 I 0.942
ENSACAG00000012015 Anolis carolinensis ENSACAG00000012015 I 0.942
CPEB4 Canis familiaris ENSCAFG00000016761 I 0.935
CPEB4 Oryzias latipes ENSORLG00000001711 I 0.935
CPEB4 Danio rerio ENSDARG00000060495 I 0.935
CPEB4 Gasterosteus aculeatus ENSGACG00000020430 I 0.935
CPEB4 Macaca mulatta ENSMMUG00000019926 I 0.935
CPEB4 Takifugu rubripes ENSTRUG00000010692 I 0.935
CPEB4 Ornithorhynchus anatinus ENSOANG00000003990 I 0.929
CPEB4 Meleagris gallopavo ENSMGAG00000003660 I 0.929
CPEB4 Gallus gallus ENSGALG00000014074 I 0.929
CPEB4 Oryzias latipes ENSORLG00000007328 I 0.928
CPEB4 Sorex araneus ENSSARG00000013389 I 0.928
CPEB4 Tetraodon nigroviridis ENSTNIG00000017077 I 0.928
CPEB4 Gasterosteus aculeatus ENSGACG00000018422 I 0.928
CPEB4 Takifugu rubripes ENSTRUG00000010947 I 0.928
gw.572.2.1 Branchiostoma floridae gw.572.2.1 I 0.920
nasonia_NCBI_hmm338954 Nasonia vitripennis nasonia_NCBI_hmm338954 I 0.920
CPEB2 Oryzias latipes ENSORLG00000016222 I 0.913
CPEB2 Tetraodon nigroviridis ENSTNIG00000017678 I 0.913
fgenesh2_pg.scaffold_143000050 Branchiostoma floridae fgenesh2_pg.scaffold_143000050 I 0.913
CPEB3 Pteropus vampyrus ENSPVAG00000007664 I 0.912
CPEB2 Takifugu rubripes ENSTRUG00000013956 I 0.906
CPEB2 Pteropus vampyrus ENSPVAG00000007732 I 0.905
CPEB2 Gasterosteus aculeatus ENSGACG00000013966 I 0.899
CPEB3 Procavia capensis ENSPCAG00000012417 I 0.898
XP_789277.1 Strongylocentrotus purpuratus XP_789277.1 I 0.892
XP_001187928.1 Strongylocentrotus purpuratus XP_001187928.1 I 0.892
DGIL_AUG5s10609g1t1 Acyrtosiphon pisum DGIL_AUG5s10609g1t1 I 0.891
D3ZHK8_RAT Rattus norvegicus ENSRNOG00000005043 I 0.890
ISCW010113 Ixodes scapularis ISCW010113 I 0.885
cpeb2 Xenopus tropicalis ENSXETG00000020324 I 0.884
GF10140 Drosophila ananassae FBgn0087181 I 0.877
GH16131 Drosophila grimshawi FBgn0123602 I 0.876
GK17460 Drosophila willistoni FBgn0219459 I 0.870
orb2 Drosophila melanogaster FBgn0262573 D 0.870
GI12400 Drosophila mojavensis FBgn0135157 I 0.870
GG15051 Drosophila erecta FBgn0107305 I 0.870
GL20808 Drosophila persimilis FBgn0158403 I 0.870
GJ12289 Drosophila virilis FBgn0199538 I 0.870
GE21274 Drosophila yakuba FBgn0238542 I 0.870
GA19094-RA Drosophila pseudoobscura FBgn0079092 I 0.870
BGIBMGA001827 Bombyx mori BGIBMGA001827 I 0.870
e_gw1.24.94.1 Capitella teleta e_gw1.24.94.1 I 0.869
PHUM335520 Pediculus humanus PHUM335520 I 0.869
amel4_ncbi_hmm4978 Apis mellifera amel4_ncbi_hmm4978 I 0.856
CPEB4 Vicugna pacos ENSVPAG00000010897 I 0.855
CPEB2 Sorex araneus ENSSARG00000010559 I 0.854
CPEB2 Vicugna pacos ENSVPAG00000006185 I 0.854
e_gw1.21.3.1 Lottia gigantea e_gw1.21.3.1 I 0.848
CPEB2 Danio rerio ENSDARG00000052604 I 0.847
e_gw.6.76.1 Nematostella vectensis e_gw.6.76.1 I 0.841
CPEB4 Echinops telfairi ENSETEG00000012142 I 0.835
CPEB3 Tursiops truncatus ENSTTRG00000012334 I 0.830
ENSCING00000001633 Ciona intestinalis ENSCING00000001633 I 0.830
XP_002159261.1 Hydra magnipapillata XP_002159261.1 I 0.827
PASA_GEN_0800168 Daphnia pulex PASA_GEN_0800168 I 0.823
fgeneshTA2_pg.C_scaffold_8000081 Trichoplax adhaerens fgeneshTA2_pg.C_scaffold_8000081 I 0.799
111676 Helobdella robusta 111676 I 0.799
AGAP002296 Anopheles gambiae AGAP002296 I 0.791
CPEB4 Sus scrofa ENSSSCG00000016981 I 0.771
CPEB3 Myotis lucifugus ENSMLUG00000009474 I 0.768
CPEB3 Vicugna pacos ENSVPAG00000002144 I 0.768
SNAPOd2T00005918001 Oikopleura dioica SNAPOd2T00005918001 I 0.763
CPEB3 Otolemur garnettii ENSOGAG00000002002 I 0.752
cpeb4 Xenopus tropicalis ENSXETG00000012731 I 0.741
CPEB3 Tarsius syrichta ENSTSYG00000003928 I 0.737
CPEB4 Tetraodon nigroviridis ENSTNIG00000018221 I 0.732
AAEL012065 Aedes aegypti AAEL012065 I 0.714
Sjc_0029950 Schistosoma japonicum Sjc_0029950 I 0.703
79994 Helobdella robusta 79994 I 0.702