cpeb3 (Danio rerio)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSDARG00000060103 T36195_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
CPEB4
M149_0.6 		Homo sapiens UUUUUU RNAcompete
Ray et al.(2013)
RNCMPT00158 		0.949
CPEB2
M012_0.6 		Homo sapiens CHUUUUU RNAcompete
Ray et al.(2013)
RNCMPT00012 		0.942
orb2
M120_0.6 		Drosophila melanogaster KUUUKKK RNAcompete
Ray et al.(2013)
RNCMPT00126 		0.856
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSDARP00000078789 RRM 44 109
ENSDARP00000078789 RRM 152 222

Links

Other RRM family RBPs
Other Danio rerio RBPs

151 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
CPEB3 Takifugu rubripes ENSTRUG00000011309 I 0.986
CPEB3 Oryzias latipes ENSORLG00000000726 I 0.985
CPEB3 Tetraodon nigroviridis ENSTNIG00000004021 I 0.978
CPEB3 Choloepus hoffmanni ENSCHOG00000000272 I 0.978
CPEB3 Ornithorhynchus anatinus ENSOANG00000015723 I 0.978
CPEB3 Sorex araneus ENSSARG00000001994 I 0.978
CPEB3 Equus caballus ENSECAG00000000077 I 0.978
CPEB3 Meleagris gallopavo ENSMGAG00000009148 I 0.971
CPEB3 Canis familiaris ENSCAFG00000007423 I 0.971
ENSPPYG00000002481 Pongo pygmaeus ENSPPYG00000002481 I 0.971
CPEB3 Microcebus murinus ENSMICG00000017842 I 0.971
CPEB3 Loxodonta africana ENSLAFG00000018716 I 0.971
CPEB3 Macaca mulatta ENSMMUG00000015050 I 0.971
Cpeb3 Mus musculus ENSMUSG00000039652 I 0.971
Ame_R003954 Ailuropoda melanoleuca Ame_R003954 I 0.971
CPEB3 Oryctolagus cuniculus ENSOCUG00000010454 I 0.971
CPEB3 Monodelphis domestica ENSMODG00000006673 I 0.971
cpeb3 Xenopus tropicalis ENSXETG00000012190 I 0.971
CPEB3 Anolis carolinensis ENSACAG00000006335 I 0.971
CPEB3 Bos taurus ENSBTAG00000015450 I 0.971
CPEB3 Gorilla gorilla ENSGGOG00000016441 I 0.971
CPEB3 Sus scrofa ENSSSCG00000010468 I 0.971
CPEB3 Tupaia belangeri ENSTBEG00000013125 I 0.971
LOC100392612 Callithrix jacchus ENSCJAG00000008495 I 0.971
CPEB3 Taeniopygia guttata ENSTGUG00000008988 I 0.971
Cpeb3 Rattus norvegicus ENSRNOG00000020689 I 0.971
CPEB3 Pan troglodytes ENSPTRG00000002753 I 0.971
CPEB3 Gallus gallus ENSGALG00000006912 I 0.971
CPEB3 Homo sapiens ENSG00000107864 I 0.971
CPEB3 Gasterosteus aculeatus ENSGACG00000002944 I 0.964
CPEB3 Echinops telfairi ENSETEG00000000111 I 0.964
CPEB3 Macropus eugenii ENSMEUG00000009948 I 0.964
CPEB4 Takifugu rubripes ENSTRUG00000010692 I 0.942
CPEB4 Gasterosteus aculeatus ENSGACG00000020430 I 0.942
CPEB4 Danio rerio ENSDARG00000060495 I 0.942
CPEB4 Oryzias latipes ENSORLG00000001711 I 0.942
CPEB2 Oryctolagus cuniculus ENSOCUG00000007950 I 0.942
CPEB2 Taeniopygia guttata ENSTGUG00000009822 I 0.942
XR_025355.1 Pan troglodytes ENSPTRG00000015924 I 0.942
ENSPPYG00000014613 Pongo pygmaeus ENSPPYG00000014613 I 0.942
CPEB2 Otolemur garnettii ENSOGAG00000011237 I 0.942
CPEB2 Tursiops truncatus ENSTTRG00000003940 I 0.942
CPEB2 Monodelphis domestica ENSMODG00000001149 I 0.942
CPEB2 Canis familiaris ENSCAFG00000015372 I 0.942
CPEB2 Loxodonta africana ENSLAFG00000007142 I 0.942
Ame_R004097 Ailuropoda melanoleuca Ame_R004097 I 0.942
CPEB2 Gorilla gorilla ENSGGOG00000004449 I 0.942
CPEB2 Gallus gallus ENSGALG00000014516 I 0.942
LOC100402805 Callithrix jacchus ENSCJAG00000012227 I 0.942
CPEB2 Homo sapiens ENSG00000137449 D 0.942
CPEB2 Choloepus hoffmanni ENSCHOG00000003058 I 0.942
CPEB2 Macropus eugenii ENSMEUG00000008074 I 0.942
CPEB2 Bos taurus ENSBTAG00000019847 I 0.942
CPEB2 Equus caballus ENSECAG00000008722 I 0.942
Cpeb2 Mus musculus ENSMUSG00000039782 I 0.942
Cpeb2 Dipodomys ordii ENSDORG00000015311 I 0.942
CPEB2 Sus scrofa ENSSSCG00000008736 I 0.942
CPEB2 Macaca mulatta ENSMMUG00000001384 I 0.942
CPEB2 Meleagris gallopavo ENSMGAG00000005200 I 0.942
CPEB2 Cavia porcellus ENSCPOG00000001180 I 0.942
CPEB4 Callithrix jacchus ENSCJAG00000019166 I 0.935
CPEB4 Cavia porcellus ENSCPOG00000015530 I 0.935
CPEB4 Tupaia belangeri ENSTBEG00000001429 I 0.935
CPEB4 Taeniopygia guttata ENSTGUG00000000329 I 0.935
CPEB4 Tetraodon nigroviridis ENSTNIG00000017077 I 0.935
ADH10187 Xenopus laevis ADH10187 I 0.935
Ame_R004815 Ailuropoda melanoleuca Ame_R004815 I 0.935
CPEB4 Anolis carolinensis ENSACAG00000015039 I 0.935
CPEB4 Tarsius syrichta ENSTSYG00000003136 I 0.935
A7Z087_BOVIN Bos taurus ENSBTAG00000009995 I 0.935
CPEB4 Takifugu rubripes ENSTRUG00000010947 I 0.935
CPEB4 Spermophilus tridecemlineatus ENSSTOG00000006077 I 0.935
CPEB4 Otolemur garnettii ENSOGAG00000004243 I 0.935
CPEB4 Gorilla gorilla ENSGGOG00000010097 I 0.935
LOC100058918 Equus caballus ENSECAG00000016921 I 0.935
CPEB4 Ochotona princeps ENSOPRG00000002868 I 0.935
CPEB4 Oryzias latipes ENSORLG00000007328 I 0.935
CPEB4 Erinaceus europaeus ENSEEUG00000010887 I 0.935
CPEB4 Myotis lucifugus ENSMLUG00000014640 I 0.935
CPEB4 Oryctolagus cuniculus ENSOCUG00000008971 I 0.935
CPEB4 Homo sapiens ENSG00000113742 D 0.935
Cpeb4 Mus musculus ENSMUSG00000020300 I 0.935
CPEB4 Monodelphis domestica ENSMODG00000006036 I 0.935
CPEB4 Procavia capensis ENSPCAG00000007021 I 0.935
CPEB4 Loxodonta africana ENSLAFG00000016030 I 0.935
CPEB4 Pan troglodytes ENSPTRG00000017545 I 0.935
Cpeb4 Rattus norvegicus ENSRNOG00000033169 I 0.935
CPEB4 Pteropus vampyrus ENSPVAG00000007863 I 0.935
ENSPPYG00000016058 Pongo pygmaeus ENSPPYG00000016058 I 0.935
CPEB4 Gasterosteus aculeatus ENSGACG00000018422 I 0.935
CPEB2 Ornithorhynchus anatinus ENSOANG00000003552 I 0.934
ENSACAG00000012015 Anolis carolinensis ENSACAG00000012015 I 0.934
CPEB4 Canis familiaris ENSCAFG00000016761 I 0.928
CPEB4 Macaca mulatta ENSMMUG00000019926 I 0.928
CPEB4 Meleagris gallopavo ENSMGAG00000003660 I 0.921
CPEB4 Gallus gallus ENSGALG00000014074 I 0.921
CPEB4 Ornithorhynchus anatinus ENSOANG00000003990 I 0.921
CPEB2 Tetraodon nigroviridis ENSTNIG00000017678 I 0.920
CPEB2 Oryzias latipes ENSORLG00000016222 I 0.920
CPEB4 Sorex araneus ENSSARG00000013389 I 0.920
CPEB2 Takifugu rubripes ENSTRUG00000013956 I 0.913
gw.572.2.1 Branchiostoma floridae gw.572.2.1 I 0.913
nasonia_NCBI_hmm338954 Nasonia vitripennis nasonia_NCBI_hmm338954 I 0.912
CPEB2 Gasterosteus aculeatus ENSGACG00000013966 I 0.906
fgenesh2_pg.scaffold_143000050 Branchiostoma floridae fgenesh2_pg.scaffold_143000050 I 0.906
CPEB2 Pteropus vampyrus ENSPVAG00000007732 I 0.898
XP_001187928.1 Strongylocentrotus purpuratus XP_001187928.1 I 0.892
XP_789277.1 Strongylocentrotus purpuratus XP_789277.1 I 0.892
DGIL_AUG5s10609g1t1 Acyrtosiphon pisum DGIL_AUG5s10609g1t1 I 0.891
CPEB3 Pteropus vampyrus ENSPVAG00000007664 I 0.891
D3ZHK8_RAT Rattus norvegicus ENSRNOG00000005043 I 0.883
ISCW010113 Ixodes scapularis ISCW010113 I 0.878
GF10140 Drosophila ananassae FBgn0087181 I 0.877
cpeb2 Xenopus tropicalis ENSXETG00000020324 I 0.877
GH16131 Drosophila grimshawi FBgn0123602 I 0.876
CPEB3 Procavia capensis ENSPCAG00000012417 I 0.876
BGIBMGA001827 Bombyx mori BGIBMGA001827 I 0.870
orb2 Drosophila melanogaster FBgn0262573 D 0.870
GG15051 Drosophila erecta FBgn0107305 I 0.870
GE21274 Drosophila yakuba FBgn0238542 I 0.870
GK17460 Drosophila willistoni FBgn0219459 I 0.870
GJ12289 Drosophila virilis FBgn0199538 I 0.870
GL20808 Drosophila persimilis FBgn0158403 I 0.870
GI12400 Drosophila mojavensis FBgn0135157 I 0.870
GA19094-RA Drosophila pseudoobscura FBgn0079092 I 0.870
PHUM335520 Pediculus humanus PHUM335520 I 0.861
amel4_ncbi_hmm4978 Apis mellifera amel4_ncbi_hmm4978 I 0.856
CPEB4 Vicugna pacos ENSVPAG00000010897 I 0.848
CPEB2 Vicugna pacos ENSVPAG00000006185 I 0.847
CPEB2 Sorex araneus ENSSARG00000010559 I 0.847
CPEB2 Danio rerio ENSDARG00000052604 I 0.847
e_gw1.24.94.1 Capitella teleta e_gw1.24.94.1 I 0.847
e_gw1.21.3.1 Lottia gigantea e_gw1.21.3.1 I 0.833
e_gw.6.76.1 Nematostella vectensis e_gw.6.76.1 I 0.833
CPEB4 Echinops telfairi ENSETEG00000012142 I 0.827
XP_002159261.1 Hydra magnipapillata XP_002159261.1 I 0.820
ENSCING00000001633 Ciona intestinalis ENSCING00000001633 I 0.816
PASA_GEN_0800168 Daphnia pulex PASA_GEN_0800168 I 0.816
CPEB3 Tursiops truncatus ENSTTRG00000012334 I 0.809
fgeneshTA2_pg.C_scaffold_8000081 Trichoplax adhaerens fgeneshTA2_pg.C_scaffold_8000081 I 0.799
AGAP002296 Anopheles gambiae AGAP002296 I 0.791
111676 Helobdella robusta 111676 I 0.791
CPEB4 Sus scrofa ENSSSCG00000016981 I 0.779
CPEB3 Vicugna pacos ENSVPAG00000002144 I 0.754
CPEB3 Myotis lucifugus ENSMLUG00000009474 I 0.754
cpeb4 Xenopus tropicalis ENSXETG00000012731 I 0.748
SNAPOd2T00005918001 Oikopleura dioica SNAPOd2T00005918001 I 0.748
CPEB3 Otolemur garnettii ENSOGAG00000002002 I 0.737
CPEB4 Tetraodon nigroviridis ENSTNIG00000018221 I 0.732
CPEB3 Tarsius syrichta ENSTSYG00000003928 I 0.723
AAEL012065 Aedes aegypti AAEL012065 I 0.714