gw.572.2.1 (Branchiostoma floridae)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 gw.572.2.1 T53439_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
CPEB2
M012_0.6 		Homo sapiens CHUUUUU RNAcompete
Ray et al.(2013)
RNCMPT00012 		0.926
CPEB4
M149_0.6 		Homo sapiens UUUUUU RNAcompete
Ray et al.(2013)
RNCMPT00158 		0.906
orb2
M120_0.6 		Drosophila melanogaster KUUUKKK RNAcompete
Ray et al.(2013)
RNCMPT00126 		0.896
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
gw.572.2.1 RRM 7 73
gw.572.2.1 RRM 115 180

Links

Other RRM family RBPs
Other Branchiostoma floridae RBPs

153 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
fgenesh2_pg.scaffold_143000050 Branchiostoma floridae fgenesh2_pg.scaffold_143000050 I 0.992
CPEB2 Bos taurus ENSBTAG00000019847 I 0.955
CPEB2 Homo sapiens ENSG00000137449 D 0.955
Cpeb2 Mus musculus ENSMUSG00000039782 I 0.955
CPEB2 Ornithorhynchus anatinus ENSOANG00000003552 I 0.955
CPEB2 Oryctolagus cuniculus ENSOCUG00000007950 I 0.955
CPEB2 Canis familiaris ENSCAFG00000015372 I 0.955
CPEB2 Taeniopygia guttata ENSTGUG00000009822 I 0.955
CPEB2 Macaca mulatta ENSMMUG00000001384 I 0.955
LOC100402805 Callithrix jacchus ENSCJAG00000012227 I 0.955
CPEB2 Monodelphis domestica ENSMODG00000001149 I 0.955
CPEB2 Choloepus hoffmanni ENSCHOG00000003058 I 0.955
CPEB2 Macropus eugenii ENSMEUG00000008074 I 0.955
CPEB2 Loxodonta africana ENSLAFG00000007142 I 0.955
CPEB2 Cavia porcellus ENSCPOG00000001180 I 0.955
CPEB2 Meleagris gallopavo ENSMGAG00000005200 I 0.955
XR_025355.1 Pan troglodytes ENSPTRG00000015924 I 0.955
Ame_R004097 Ailuropoda melanoleuca Ame_R004097 I 0.955
CPEB2 Sus scrofa ENSSSCG00000008736 I 0.955
CPEB2 Equus caballus ENSECAG00000008722 I 0.955
ENSPPYG00000014613 Pongo pygmaeus ENSPPYG00000014613 I 0.955
CPEB2 Otolemur garnettii ENSOGAG00000011237 I 0.955
CPEB2 Gallus gallus ENSGALG00000014516 I 0.955
CPEB2 Tursiops truncatus ENSTTRG00000003940 I 0.955
Cpeb2 Dipodomys ordii ENSDORG00000015311 I 0.955
CPEB2 Gorilla gorilla ENSGGOG00000004449 I 0.955
XP_001187928.1 Strongylocentrotus purpuratus XP_001187928.1 I 0.948
XP_789277.1 Strongylocentrotus purpuratus XP_789277.1 I 0.948
ENSACAG00000012015 Anolis carolinensis ENSACAG00000012015 I 0.947
ISCW010113 Ixodes scapularis ISCW010113 I 0.940
CPEB4 Loxodonta africana ENSLAFG00000016030 I 0.934
CPEB4 Gorilla gorilla ENSGGOG00000010097 I 0.934
Cpeb4 Mus musculus ENSMUSG00000020300 I 0.934
CPEB4 Ochotona princeps ENSOPRG00000002868 I 0.934
CPEB4 Pan troglodytes ENSPTRG00000017545 I 0.934
CPEB4 Procavia capensis ENSPCAG00000007021 I 0.934
CPEB4 Otolemur garnettii ENSOGAG00000004243 I 0.934
CPEB4 Pteropus vampyrus ENSPVAG00000007863 I 0.934
CPEB4 Myotis lucifugus ENSMLUG00000014640 I 0.934
CPEB4 Monodelphis domestica ENSMODG00000006036 I 0.934
CPEB4 Oryctolagus cuniculus ENSOCUG00000008971 I 0.934
Cpeb4 Rattus norvegicus ENSRNOG00000033169 I 0.934
ENSPPYG00000016058 Pongo pygmaeus ENSPPYG00000016058 I 0.934
CPEB4 Callithrix jacchus ENSCJAG00000019166 I 0.934
LOC100058918 Equus caballus ENSECAG00000016921 I 0.934
CPEB4 Tupaia belangeri ENSTBEG00000001429 I 0.934
CPEB4 Tarsius syrichta ENSTSYG00000003136 I 0.934
CPEB4 Anolis carolinensis ENSACAG00000015039 I 0.934
CPEB4 Cavia porcellus ENSCPOG00000015530 I 0.934
CPEB4 Erinaceus europaeus ENSEEUG00000010887 I 0.934
ADH10187 Xenopus laevis ADH10187 I 0.934
CPEB4 Taeniopygia guttata ENSTGUG00000000329 I 0.934
CPEB4 Homo sapiens ENSG00000113742 D 0.934
Ame_R004815 Ailuropoda melanoleuca Ame_R004815 I 0.934
A7Z087_BOVIN Bos taurus ENSBTAG00000009995 I 0.934
CPEB4 Canis familiaris ENSCAFG00000016761 I 0.928
Cpeb3 Rattus norvegicus ENSRNOG00000020689 I 0.927
Cpeb3 Mus musculus ENSMUSG00000039652 I 0.927
CPEB3 Bos taurus ENSBTAG00000015450 I 0.927
CPEB4 Takifugu rubripes ENSTRUG00000010692 I 0.927
CPEB4 Oryzias latipes ENSORLG00000007328 I 0.927
Ame_R003954 Ailuropoda melanoleuca Ame_R003954 I 0.927
CPEB3 Pan troglodytes ENSPTRG00000002753 I 0.927
ENSPPYG00000002481 Pongo pygmaeus ENSPPYG00000002481 I 0.927
CPEB4 Oryzias latipes ENSORLG00000001711 I 0.927
cpeb3 Xenopus tropicalis ENSXETG00000012190 I 0.927
CPEB3 Oryctolagus cuniculus ENSOCUG00000010454 I 0.927
CPEB4 Tetraodon nigroviridis ENSTNIG00000017077 I 0.927
CPEB3 Canis familiaris ENSCAFG00000007423 I 0.927
CPEB3 Anolis carolinensis ENSACAG00000006335 I 0.927
CPEB3 Macaca mulatta ENSMMUG00000015050 I 0.927
CPEB4 Spermophilus tridecemlineatus ENSSTOG00000006077 I 0.927
CPEB3 Gorilla gorilla ENSGGOG00000016441 I 0.927
CPEB4 Danio rerio ENSDARG00000060495 I 0.927
CPEB3 Gallus gallus ENSGALG00000006912 I 0.927
CPEB4 Gasterosteus aculeatus ENSGACG00000020430 I 0.927
CPEB3 Homo sapiens ENSG00000107864 I 0.927
CPEB3 Sus scrofa ENSSSCG00000010468 I 0.927
CPEB4 Gasterosteus aculeatus ENSGACG00000018422 I 0.927
CPEB3 Loxodonta africana ENSLAFG00000018716 I 0.927
CPEB3 Tupaia belangeri ENSTBEG00000013125 I 0.927
CPEB3 Microcebus murinus ENSMICG00000017842 I 0.927
CPEB4 Macaca mulatta ENSMMUG00000019926 I 0.927
CPEB3 Monodelphis domestica ENSMODG00000006673 I 0.927
CPEB3 Meleagris gallopavo ENSMGAG00000009148 I 0.927
CPEB3 Macropus eugenii ENSMEUG00000009948 I 0.927
CPEB3 Taeniopygia guttata ENSTGUG00000008988 I 0.927
LOC100392612 Callithrix jacchus ENSCJAG00000008495 I 0.927
CPEB4 Gallus gallus ENSGALG00000014074 I 0.921
CPEB4 Meleagris gallopavo ENSMGAG00000003660 I 0.921
CPEB4 Ornithorhynchus anatinus ENSOANG00000003990 I 0.921
CPEB3 Sorex araneus ENSSARG00000001994 I 0.920
CPEB3 Ornithorhynchus anatinus ENSOANG00000015723 I 0.920
CPEB3 Choloepus hoffmanni ENSCHOG00000000272 I 0.920
CPEB3 Equus caballus ENSECAG00000000077 I 0.920
CPEB4 Takifugu rubripes ENSTRUG00000010947 I 0.920
CPEB3 Echinops telfairi ENSETEG00000000111 I 0.920
CPEB4 Sorex araneus ENSSARG00000013389 I 0.920
CPEB2 Oryzias latipes ENSORLG00000016222 I 0.917
CPEB2 Tetraodon nigroviridis ENSTNIG00000017678 I 0.917
DGIL_AUG5s10609g1t1 Acyrtosiphon pisum DGIL_AUG5s10609g1t1 I 0.917
CPEB2 Takifugu rubripes ENSTRUG00000013956 I 0.917
CPEB3 Takifugu rubripes ENSTRUG00000011309 I 0.913
cpeb3 Danio rerio ENSDARG00000060103 I 0.913
CPEB3 Oryzias latipes ENSORLG00000000726 I 0.912
amel4_ncbi_hmm4978 Apis mellifera amel4_ncbi_hmm4978 I 0.910
CPEB2 Gasterosteus aculeatus ENSGACG00000013966 I 0.910
BGIBMGA001827 Bombyx mori BGIBMGA001827 I 0.910
CPEB2 Pteropus vampyrus ENSPVAG00000007732 I 0.910
GF10140 Drosophila ananassae FBgn0087181 I 0.910
D3ZHK8_RAT Rattus norvegicus ENSRNOG00000005043 I 0.907
CPEB3 Tetraodon nigroviridis ENSTNIG00000004021 I 0.906
CPEB3 Gasterosteus aculeatus ENSGACG00000002944 I 0.905
GH16131 Drosophila grimshawi FBgn0123602 I 0.902
GA19094-RA Drosophila pseudoobscura FBgn0079092 I 0.902
CPEB3 Pteropus vampyrus ENSPVAG00000007664 I 0.902
GG15051 Drosophila erecta FBgn0107305 I 0.902
GL20808 Drosophila persimilis FBgn0158403 I 0.902
GK17460 Drosophila willistoni FBgn0219459 I 0.902
GE21274 Drosophila yakuba FBgn0238542 I 0.902
orb2 Drosophila melanogaster FBgn0262573 D 0.902
GI12400 Drosophila mojavensis FBgn0135157 I 0.902
GJ12289 Drosophila virilis FBgn0199538 I 0.902
e_gw1.24.94.1 Capitella teleta e_gw1.24.94.1 I 0.902
cpeb2 Xenopus tropicalis ENSXETG00000020324 I 0.895
PHUM335520 Pediculus humanus PHUM335520 I 0.895
e_gw1.21.3.1 Lottia gigantea e_gw1.21.3.1 I 0.895
nasonia_NCBI_hmm338954 Nasonia vitripennis nasonia_NCBI_hmm338954 I 0.891
ENSCING00000001633 Ciona intestinalis ENSCING00000001633 I 0.876
CPEB2 Sorex araneus ENSSARG00000010559 I 0.865
e_gw.6.76.1 Nematostella vectensis e_gw.6.76.1 I 0.865
CPEB2 Vicugna pacos ENSVPAG00000006185 I 0.865
PASA_GEN_0800168 Daphnia pulex PASA_GEN_0800168 I 0.847
CPEB2 Danio rerio ENSDARG00000052604 I 0.842
CPEB4 Vicugna pacos ENSVPAG00000010897 I 0.833
CPEB4 Echinops telfairi ENSETEG00000012142 I 0.833
CPEB3 Procavia capensis ENSPCAG00000012417 I 0.832
AGAP002296 Anopheles gambiae AGAP002296 I 0.822
XP_002159261.1 Hydra magnipapillata XP_002159261.1 I 0.820
fgeneshTA2_pg.C_scaffold_8000081 Trichoplax adhaerens fgeneshTA2_pg.C_scaffold_8000081 I 0.807
CPEB3 Tursiops truncatus ENSTTRG00000012334 I 0.789
SNAPOd2T00005918001 Oikopleura dioica SNAPOd2T00005918001 I 0.785
111676 Helobdella robusta 111676 I 0.784
CPEB4 Sus scrofa ENSSSCG00000016981 I 0.764
AAEL012065 Aedes aegypti AAEL012065 I 0.743
CPEB3 Vicugna pacos ENSVPAG00000002144 I 0.737
CPEB3 Myotis lucifugus ENSMLUG00000009474 I 0.737
79994 Helobdella robusta 79994 I 0.728
cpeb4 Xenopus tropicalis ENSXETG00000012731 I 0.727
69117 Helobdella robusta 69117 N 0.726
CPEB3 Otolemur garnettii ENSOGAG00000002002 I 0.715
CPEB4 Tetraodon nigroviridis ENSTNIG00000018221 I 0.715
CPEB3 Tarsius syrichta ENSTSYG00000003928 I 0.701