nasonia_NCBI_hmm338954 (Nasonia vitripennis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 nasonia_NCBI_hmm338954 T32219_0.6 DroSpeGe (2008-Jul-18)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
orb2
M120_0.6 		Drosophila melanogaster KUUUKKK RNAcompete
Ray et al.(2013)
RNCMPT00126 		0.920
CPEB4
M149_0.6 		Homo sapiens UUUUUU RNAcompete
Ray et al.(2013)
RNCMPT00158 		0.899
CPEB2
M012_0.6 		Homo sapiens CHUUUUU RNAcompete
Ray et al.(2013)
RNCMPT00012 		0.877
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
nasonia_NCBI_hmm338954 RRM 92 156
nasonia_NCBI_hmm338954 RRM 200 270

Links

Other RRM family RBPs
Other Nasonia vitripennis RBPs

152 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
DGIL_AUG5s10609g1t1 Acyrtosiphon pisum DGIL_AUG5s10609g1t1 I 0.934
GH16131 Drosophila grimshawi FBgn0123602 I 0.926
orb2 Drosophila melanogaster FBgn0262573 D 0.920
CPEB3 Choloepus hoffmanni ENSCHOG00000000272 I 0.920
GE21274 Drosophila yakuba FBgn0238542 I 0.920
CPEB3 Sorex araneus ENSSARG00000001994 I 0.920
GA19094-RA Drosophila pseudoobscura FBgn0079092 I 0.920
CPEB3 Ornithorhynchus anatinus ENSOANG00000015723 I 0.920
GK17460 Drosophila willistoni FBgn0219459 I 0.920
CPEB3 Equus caballus ENSECAG00000000077 I 0.920
GI12400 Drosophila mojavensis FBgn0135157 I 0.920
GG15051 Drosophila erecta FBgn0107305 I 0.920
GJ12289 Drosophila virilis FBgn0199538 I 0.920
GL20808 Drosophila persimilis FBgn0158403 I 0.920
amel4_ncbi_hmm4978 Apis mellifera amel4_ncbi_hmm4978 I 0.913
CPEB4 Oryctolagus cuniculus ENSOCUG00000008971 I 0.912
cpeb3 Xenopus tropicalis ENSXETG00000012190 I 0.912
CPEB3 Oryctolagus cuniculus ENSOCUG00000010454 I 0.912
CPEB4 Oryzias latipes ENSORLG00000007328 I 0.912
Ame_R003954 Ailuropoda melanoleuca Ame_R003954 I 0.912
Cpeb3 Mus musculus ENSMUSG00000039652 I 0.912
CPEB4 Ochotona princeps ENSOPRG00000002868 I 0.912
CPEB4 Otolemur garnettii ENSOGAG00000004243 I 0.912
CPEB3 Monodelphis domestica ENSMODG00000006673 I 0.912
Ame_R004815 Ailuropoda melanoleuca Ame_R004815 I 0.912
CPEB3 Microcebus murinus ENSMICG00000017842 I 0.912
CPEB4 Myotis lucifugus ENSMLUG00000014640 I 0.912
CPEB3 Macaca mulatta ENSMMUG00000015050 I 0.912
CPEB4 Procavia capensis ENSPCAG00000007021 I 0.912
CPEB4 Monodelphis domestica ENSMODG00000006036 I 0.912
GF10140 Drosophila ananassae FBgn0087181 I 0.912
CPEB3 Pan troglodytes ENSPTRG00000002753 I 0.912
CPEB3 Tupaia belangeri ENSTBEG00000013125 I 0.912
CPEB4 Tupaia belangeri ENSTBEG00000001429 I 0.912
CPEB4 Taeniopygia guttata ENSTGUG00000000329 I 0.912
CPEB3 Taeniopygia guttata ENSTGUG00000008988 I 0.912
CPEB4 Takifugu rubripes ENSTRUG00000010947 I 0.912
CPEB4 Tetraodon nigroviridis ENSTNIG00000017077 I 0.912
CPEB3 Sus scrofa ENSSSCG00000010468 I 0.912
CPEB3 Meleagris gallopavo ENSMGAG00000009148 I 0.912
CPEB4 Tarsius syrichta ENSTSYG00000003136 I 0.912
ENSPPYG00000016058 Pongo pygmaeus ENSPPYG00000016058 I 0.912
CPEB4 Pan troglodytes ENSPTRG00000017545 I 0.912
CPEB4 Pteropus vampyrus ENSPVAG00000007863 I 0.912
Cpeb4 Rattus norvegicus ENSRNOG00000033169 I 0.912
Cpeb3 Rattus norvegicus ENSRNOG00000020689 I 0.912
ENSPPYG00000002481 Pongo pygmaeus ENSPPYG00000002481 I 0.912
Cpeb4 Mus musculus ENSMUSG00000020300 I 0.912
LOC100058918 Equus caballus ENSECAG00000016921 I 0.912
cpeb3 Danio rerio ENSDARG00000060103 I 0.912
ADH10187 Xenopus laevis ADH10187 I 0.912
CPEB4 Erinaceus europaeus ENSEEUG00000010887 I 0.912
CPEB3 Homo sapiens ENSG00000107864 I 0.912
CPEB4 Gasterosteus aculeatus ENSGACG00000018422 I 0.912
CPEB4 Homo sapiens ENSG00000113742 D 0.912
CPEB4 Cavia porcellus ENSCPOG00000015530 I 0.912
CPEB4 Callithrix jacchus ENSCJAG00000019166 I 0.912
CPEB4 Anolis carolinensis ENSACAG00000015039 I 0.912
CPEB3 Anolis carolinensis ENSACAG00000006335 I 0.912
A7Z087_BOVIN Bos taurus ENSBTAG00000009995 I 0.912
CPEB3 Bos taurus ENSBTAG00000015450 I 0.912
LOC100392612 Callithrix jacchus ENSCJAG00000008495 I 0.912
CPEB3 Canis familiaris ENSCAFG00000007423 I 0.912
CPEB3 Gallus gallus ENSGALG00000006912 I 0.912
CPEB3 Echinops telfairi ENSETEG00000000111 I 0.912
CPEB3 Gorilla gorilla ENSGGOG00000016441 I 0.912
CPEB4 Loxodonta africana ENSLAFG00000016030 I 0.912
CPEB3 Loxodonta africana ENSLAFG00000018716 I 0.912
CPEB3 Macropus eugenii ENSMEUG00000009948 I 0.912
CPEB4 Gorilla gorilla ENSGGOG00000010097 I 0.912
CPEB4 Canis familiaris ENSCAFG00000016761 I 0.906
CPEB4 Spermophilus tridecemlineatus ENSSTOG00000006077 I 0.906
CPEB3 Takifugu rubripes ENSTRUG00000011309 I 0.906
CPEB4 Danio rerio ENSDARG00000060495 I 0.905
CPEB4 Takifugu rubripes ENSTRUG00000010692 I 0.905
CPEB4 Gasterosteus aculeatus ENSGACG00000020430 I 0.905
CPEB4 Oryzias latipes ENSORLG00000001711 I 0.905
CPEB4 Macaca mulatta ENSMMUG00000019926 I 0.905
PHUM335520 Pediculus humanus PHUM335520 I 0.904
CPEB4 Ornithorhynchus anatinus ENSOANG00000003990 I 0.899
CPEB4 Gallus gallus ENSGALG00000014074 I 0.899
CPEB4 Meleagris gallopavo ENSMGAG00000003660 I 0.899
CPEB3 Tetraodon nigroviridis ENSTNIG00000004021 I 0.899
CPEB4 Sorex araneus ENSSARG00000013389 I 0.898
CPEB3 Oryzias latipes ENSORLG00000000726 I 0.898
ISCW010113 Ixodes scapularis ISCW010113 I 0.892
gw.572.2.1 Branchiostoma floridae gw.572.2.1 I 0.891
CPEB2 Taeniopygia guttata ENSTGUG00000009822 I 0.891
CPEB2 Choloepus hoffmanni ENSCHOG00000003058 I 0.891
CPEB2 Otolemur garnettii ENSOGAG00000011237 I 0.891
LOC100402805 Callithrix jacchus ENSCJAG00000012227 I 0.891
CPEB2 Canis familiaris ENSCAFG00000015372 I 0.891
CPEB2 Gallus gallus ENSGALG00000014516 I 0.891
CPEB2 Macropus eugenii ENSMEUG00000008074 I 0.891
ENSACAG00000012015 Anolis carolinensis ENSACAG00000012015 I 0.891
CPEB2 Bos taurus ENSBTAG00000019847 I 0.891
CPEB2 Tursiops truncatus ENSTTRG00000003940 I 0.891
CPEB2 Cavia porcellus ENSCPOG00000001180 I 0.891
CPEB2 Macaca mulatta ENSMMUG00000001384 I 0.891
Ame_R004097 Ailuropoda melanoleuca Ame_R004097 I 0.891
CPEB2 Loxodonta africana ENSLAFG00000007142 I 0.891
CPEB2 Ornithorhynchus anatinus ENSOANG00000003552 I 0.891
CPEB2 Equus caballus ENSECAG00000008722 I 0.891
CPEB2 Gorilla gorilla ENSGGOG00000004449 I 0.891
CPEB2 Meleagris gallopavo ENSMGAG00000005200 I 0.891
Cpeb2 Mus musculus ENSMUSG00000039782 I 0.891
XR_025355.1 Pan troglodytes ENSPTRG00000015924 I 0.891
CPEB2 Monodelphis domestica ENSMODG00000001149 I 0.891
Cpeb2 Dipodomys ordii ENSDORG00000015311 I 0.891
ENSPPYG00000014613 Pongo pygmaeus ENSPPYG00000014613 I 0.891
CPEB2 Oryctolagus cuniculus ENSOCUG00000007950 I 0.891
CPEB2 Homo sapiens ENSG00000137449 D 0.891
CPEB2 Sus scrofa ENSSSCG00000008736 I 0.891
fgenesh2_pg.scaffold_143000050 Branchiostoma floridae fgenesh2_pg.scaffold_143000050 I 0.884
CPEB3 Gasterosteus aculeatus ENSGACG00000002944 I 0.884
BGIBMGA001827 Bombyx mori BGIBMGA001827 I 0.884
CPEB2 Pteropus vampyrus ENSPVAG00000007732 I 0.868
XP_001187928.1 Strongylocentrotus purpuratus XP_001187928.1 I 0.863
XP_789277.1 Strongylocentrotus purpuratus XP_789277.1 I 0.863
CPEB2 Oryzias latipes ENSORLG00000016222 I 0.855
CPEB2 Tetraodon nigroviridis ENSTNIG00000017678 I 0.855
CPEB2 Gasterosteus aculeatus ENSGACG00000013966 I 0.855
CPEB2 Takifugu rubripes ENSTRUG00000013956 I 0.855
e_gw1.24.94.1 Capitella teleta e_gw1.24.94.1 I 0.853
D3ZHK8_RAT Rattus norvegicus ENSRNOG00000005043 I 0.847
cpeb2 Xenopus tropicalis ENSXETG00000020324 I 0.841
CPEB3 Pteropus vampyrus ENSPVAG00000007664 I 0.839
CPEB4 Vicugna pacos ENSVPAG00000010897 I 0.839
CPEB3 Procavia capensis ENSPCAG00000012417 I 0.839
e_gw1.21.3.1 Lottia gigantea e_gw1.21.3.1 I 0.832
XP_002159261.1 Hydra magnipapillata XP_002159261.1 I 0.826
e_gw.6.76.1 Nematostella vectensis e_gw.6.76.1 I 0.825
PASA_GEN_0800168 Daphnia pulex PASA_GEN_0800168 I 0.823
ENSCING00000001633 Ciona intestinalis ENSCING00000001633 I 0.816
AGAP002296 Anopheles gambiae AGAP002296 I 0.804
CPEB4 Echinops telfairi ENSETEG00000012142 I 0.804
111676 Helobdella robusta 111676 I 0.797
CPEB2 Vicugna pacos ENSVPAG00000006185 I 0.796
CPEB2 Sorex araneus ENSSARG00000010559 I 0.796
fgeneshTA2_pg.C_scaffold_8000081 Trichoplax adhaerens fgeneshTA2_pg.C_scaffold_8000081 I 0.790
CPEB2 Danio rerio ENSDARG00000052604 I 0.781
CPEB3 Tursiops truncatus ENSTTRG00000012334 I 0.771
SNAPOd2T00005918001 Oikopleura dioica SNAPOd2T00005918001 I 0.754
CPEB3 Myotis lucifugus ENSMLUG00000009474 I 0.745
CPEB3 Vicugna pacos ENSVPAG00000002144 I 0.745
CPEB4 Sus scrofa ENSSSCG00000016981 I 0.741
CPEB3 Otolemur garnettii ENSOGAG00000002002 I 0.735
79994 Helobdella robusta 79994 I 0.723
CPEB3 Tarsius syrichta ENSTSYG00000003928 I 0.721
AAEL012065 Aedes aegypti AAEL012065 I 0.719
CPEB4 Tetraodon nigroviridis ENSTNIG00000018221 I 0.715
cpeb4 Xenopus tropicalis ENSXETG00000012731 I 0.711