CPEB4 (Ornithorhynchus anatinus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSOANG00000003990 T39457_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
CPEB4
M149_0.6 		Homo sapiens UUUUUU RNAcompete
Ray et al.(2013)
RNCMPT00158 		0.986
CPEB2
M012_0.6 		Homo sapiens CHUUUUU RNAcompete
Ray et al.(2013)
RNCMPT00012 		0.935
orb2
M120_0.6 		Drosophila melanogaster KUUUKKK RNAcompete
Ray et al.(2013)
RNCMPT00126 		0.863
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSOANP00000006317 RRM 476 541
ENSOANP00000006317 RRM 584 655
ENSOANP00000006318 RRM 459 524
ENSOANP00000006318 RRM 567 638
ENSOANP00000006319 RRM 451 516
ENSOANP00000006319 RRM 559 630

Links

Other RRM family RBPs
Other Ornithorhynchus anatinus RBPs

152 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
CPEB4 Gallus gallus ENSGALG00000014074 I 1.000
CPEB4 Meleagris gallopavo ENSMGAG00000003660 I 1.000
LOC100058918 Equus caballus ENSECAG00000016921 I 0.986
Cpeb4 Rattus norvegicus ENSRNOG00000033169 I 0.986
CPEB4 Pteropus vampyrus ENSPVAG00000007863 I 0.986
CPEB4 Pan troglodytes ENSPTRG00000017545 I 0.986
Cpeb4 Mus musculus ENSMUSG00000020300 I 0.986
CPEB4 Erinaceus europaeus ENSEEUG00000010887 I 0.986
CPEB4 Homo sapiens ENSG00000113742 D 0.986
CPEB4 Loxodonta africana ENSLAFG00000016030 I 0.986
CPEB4 Tarsius syrichta ENSTSYG00000003136 I 0.986
CPEB4 Myotis lucifugus ENSMLUG00000014640 I 0.986
CPEB4 Gorilla gorilla ENSGGOG00000010097 I 0.986
CPEB4 Tupaia belangeri ENSTBEG00000001429 I 0.986
CPEB4 Taeniopygia guttata ENSTGUG00000000329 I 0.986
CPEB4 Cavia porcellus ENSCPOG00000015530 I 0.986
CPEB4 Monodelphis domestica ENSMODG00000006036 I 0.986
ADH10187 Xenopus laevis ADH10187 I 0.986
CPEB4 Anolis carolinensis ENSACAG00000015039 I 0.986
CPEB4 Otolemur garnettii ENSOGAG00000004243 I 0.986
ENSPPYG00000016058 Pongo pygmaeus ENSPPYG00000016058 I 0.986
CPEB4 Ochotona princeps ENSOPRG00000002868 I 0.986
CPEB4 Procavia capensis ENSPCAG00000007021 I 0.986
A7Z087_BOVIN Bos taurus ENSBTAG00000009995 I 0.986
CPEB4 Callithrix jacchus ENSCJAG00000019166 I 0.986
CPEB4 Oryctolagus cuniculus ENSOCUG00000008971 I 0.986
Ame_R004815 Ailuropoda melanoleuca Ame_R004815 I 0.986
CPEB4 Canis familiaris ENSCAFG00000016761 I 0.978
CPEB4 Macaca mulatta ENSMMUG00000019926 I 0.978
CPEB4 Spermophilus tridecemlineatus ENSSTOG00000006077 I 0.971
CPEB4 Gasterosteus aculeatus ENSGACG00000020430 I 0.971
CPEB4 Oryzias latipes ENSORLG00000001711 I 0.971
CPEB4 Tetraodon nigroviridis ENSTNIG00000017077 I 0.971
CPEB4 Danio rerio ENSDARG00000060495 I 0.971
CPEB4 Sorex araneus ENSSARG00000013389 I 0.971
CPEB4 Takifugu rubripes ENSTRUG00000010692 I 0.971
CPEB4 Takifugu rubripes ENSTRUG00000010947 I 0.964
CPEB4 Gasterosteus aculeatus ENSGACG00000018422 I 0.964
CPEB4 Oryzias latipes ENSORLG00000007328 I 0.964
CPEB3 Loxodonta africana ENSLAFG00000018716 I 0.935
CPEB3 Bos taurus ENSBTAG00000015450 I 0.935
cpeb3 Xenopus tropicalis ENSXETG00000012190 I 0.935
CPEB3 Homo sapiens ENSG00000107864 I 0.935
LOC100392612 Callithrix jacchus ENSCJAG00000008495 I 0.935
CPEB3 Gorilla gorilla ENSGGOG00000016441 I 0.935
Ame_R003954 Ailuropoda melanoleuca Ame_R003954 I 0.935
CPEB3 Gallus gallus ENSGALG00000006912 I 0.935
CPEB3 Anolis carolinensis ENSACAG00000006335 I 0.935
CPEB3 Meleagris gallopavo ENSMGAG00000009148 I 0.935
CPEB3 Macaca mulatta ENSMMUG00000015050 I 0.935
CPEB3 Pan troglodytes ENSPTRG00000002753 I 0.935
CPEB3 Monodelphis domestica ENSMODG00000006673 I 0.935
Cpeb3 Rattus norvegicus ENSRNOG00000020689 I 0.935
CPEB3 Tupaia belangeri ENSTBEG00000013125 I 0.935
CPEB3 Taeniopygia guttata ENSTGUG00000008988 I 0.935
CPEB3 Sus scrofa ENSSSCG00000010468 I 0.935
ENSPPYG00000002481 Pongo pygmaeus ENSPPYG00000002481 I 0.935
Cpeb3 Mus musculus ENSMUSG00000039652 I 0.935
CPEB3 Oryctolagus cuniculus ENSOCUG00000010454 I 0.935
CPEB3 Canis familiaris ENSCAFG00000007423 I 0.935
CPEB3 Microcebus murinus ENSMICG00000017842 I 0.935
CPEB3 Ornithorhynchus anatinus ENSOANG00000015723 I 0.929
CPEB3 Choloepus hoffmanni ENSCHOG00000000272 I 0.929
CPEB3 Sorex araneus ENSSARG00000001994 I 0.929
CPEB3 Equus caballus ENSECAG00000000077 I 0.929
CPEB3 Macropus eugenii ENSMEUG00000009948 I 0.928
CPEB3 Echinops telfairi ENSETEG00000000111 I 0.928
cpeb3 Danio rerio ENSDARG00000060103 I 0.921
CPEB3 Oryzias latipes ENSORLG00000000726 I 0.921
Cpeb2 Mus musculus ENSMUSG00000039782 I 0.921
CPEB2 Cavia porcellus ENSCPOG00000001180 I 0.921
LOC100402805 Callithrix jacchus ENSCJAG00000012227 I 0.921
CPEB2 Choloepus hoffmanni ENSCHOG00000003058 I 0.921
CPEB2 Otolemur garnettii ENSOGAG00000011237 I 0.921
CPEB2 Tursiops truncatus ENSTTRG00000003940 I 0.921
CPEB2 Bos taurus ENSBTAG00000019847 I 0.921
CPEB2 Oryctolagus cuniculus ENSOCUG00000007950 I 0.921
CPEB2 Canis familiaris ENSCAFG00000015372 I 0.921
CPEB2 Loxodonta africana ENSLAFG00000007142 I 0.921
CPEB2 Macropus eugenii ENSMEUG00000008074 I 0.921
Ame_R004097 Ailuropoda melanoleuca Ame_R004097 I 0.921
CPEB2 Equus caballus ENSECAG00000008722 I 0.921
CPEB2 Meleagris gallopavo ENSMGAG00000005200 I 0.921
CPEB2 Gallus gallus ENSGALG00000014516 I 0.921
CPEB2 Taeniopygia guttata ENSTGUG00000009822 I 0.921
CPEB2 Sus scrofa ENSSSCG00000008736 I 0.921
CPEB2 Monodelphis domestica ENSMODG00000001149 I 0.921
CPEB2 Homo sapiens ENSG00000137449 D 0.921
Cpeb2 Dipodomys ordii ENSDORG00000015311 I 0.921
CPEB2 Macaca mulatta ENSMMUG00000001384 I 0.921
ENSPPYG00000014613 Pongo pygmaeus ENSPPYG00000014613 I 0.921
CPEB2 Gorilla gorilla ENSGGOG00000004449 I 0.921
gw.572.2.1 Branchiostoma floridae gw.572.2.1 I 0.921
XR_025355.1 Pan troglodytes ENSPTRG00000015924 I 0.921
CPEB3 Takifugu rubripes ENSTRUG00000011309 I 0.914
CPEB2 Ornithorhynchus anatinus ENSOANG00000003552 I 0.914
fgenesh2_pg.scaffold_143000050 Branchiostoma floridae fgenesh2_pg.scaffold_143000050 I 0.914
ENSACAG00000012015 Anolis carolinensis ENSACAG00000012015 I 0.914
CPEB3 Tetraodon nigroviridis ENSTNIG00000004021 I 0.907
CPEB3 Gasterosteus aculeatus ENSGACG00000002944 I 0.906
nasonia_NCBI_hmm338954 Nasonia vitripennis nasonia_NCBI_hmm338954 I 0.899
CPEB2 Gasterosteus aculeatus ENSGACG00000013966 I 0.892
CPEB2 Pteropus vampyrus ENSPVAG00000007732 I 0.891
DGIL_AUG5s10609g1t1 Acyrtosiphon pisum DGIL_AUG5s10609g1t1 I 0.891
D3ZHK8_RAT Rattus norvegicus ENSRNOG00000005043 I 0.890
XP_789277.1 Strongylocentrotus purpuratus XP_789277.1 I 0.886
XP_001187928.1 Strongylocentrotus purpuratus XP_001187928.1 I 0.886
CPEB4 Vicugna pacos ENSVPAG00000010897 I 0.885
CPEB2 Tetraodon nigroviridis ENSTNIG00000017678 I 0.885
CPEB2 Oryzias latipes ENSORLG00000016222 I 0.885
PHUM335520 Pediculus humanus PHUM335520 I 0.884
GF10140 Drosophila ananassae FBgn0087181 I 0.884
ISCW010113 Ixodes scapularis ISCW010113 I 0.879
CPEB4 Echinops telfairi ENSETEG00000012142 I 0.878
BGIBMGA001827 Bombyx mori BGIBMGA001827 I 0.878
CPEB2 Takifugu rubripes ENSTRUG00000013956 I 0.878
GJ12289 Drosophila virilis FBgn0199538 I 0.877
GI12400 Drosophila mojavensis FBgn0135157 I 0.877
GA19094-RA Drosophila pseudoobscura FBgn0079092 I 0.877
GG15051 Drosophila erecta FBgn0107305 I 0.877
GH16131 Drosophila grimshawi FBgn0123602 I 0.877
GL20808 Drosophila persimilis FBgn0158403 I 0.877
GK17460 Drosophila willistoni FBgn0219459 I 0.877
orb2 Drosophila melanogaster FBgn0262573 D 0.877
GE21274 Drosophila yakuba FBgn0238542 I 0.877
CPEB3 Pteropus vampyrus ENSPVAG00000007664 I 0.871
cpeb2 Xenopus tropicalis ENSXETG00000020324 I 0.871
amel4_ncbi_hmm4978 Apis mellifera amel4_ncbi_hmm4978 I 0.863
e_gw1.24.94.1 Capitella teleta e_gw1.24.94.1 I 0.855
XP_002159261.1 Hydra magnipapillata XP_002159261.1 I 0.850
e_gw1.21.3.1 Lottia gigantea e_gw1.21.3.1 I 0.848
CPEB3 Procavia capensis ENSPCAG00000012417 I 0.842
e_gw.6.76.1 Nematostella vectensis e_gw.6.76.1 I 0.841
CPEB2 Sorex araneus ENSSARG00000010559 I 0.827
CPEB2 Vicugna pacos ENSVPAG00000006185 I 0.827
ENSCING00000001633 Ciona intestinalis ENSCING00000001633 I 0.811
CPEB2 Danio rerio ENSDARG00000052604 I 0.806
PASA_GEN_0800168 Daphnia pulex PASA_GEN_0800168 I 0.790
CPEB3 Tursiops truncatus ENSTTRG00000012334 I 0.790
CPEB4 Sus scrofa ENSSSCG00000016981 I 0.787
AGAP002296 Anopheles gambiae AGAP002296 I 0.786
fgeneshTA2_pg.C_scaffold_8000081 Trichoplax adhaerens fgeneshTA2_pg.C_scaffold_8000081 I 0.786
111676 Helobdella robusta 111676 I 0.779
cpeb4 Xenopus tropicalis ENSXETG00000012731 I 0.764
SNAPOd2T00005918001 Oikopleura dioica SNAPOd2T00005918001 I 0.757
CPEB3 Myotis lucifugus ENSMLUG00000009474 I 0.746
CPEB3 Vicugna pacos ENSVPAG00000002144 I 0.746
CPEB4 Tetraodon nigroviridis ENSTNIG00000018221 I 0.746
CPEB3 Otolemur garnettii ENSOGAG00000002002 I 0.725
79994 Helobdella robusta 79994 I 0.711
CPEB3 Tarsius syrichta ENSTSYG00000003928 I 0.710