CPEB3 (Oryzias latipes)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSORLG00000000726 T40076_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
CPEB4
M149_0.6 		Homo sapiens UUUUUU RNAcompete
Ray et al.(2013)
RNCMPT00158 		0.949
CPEB2
M012_0.6 		Homo sapiens CHUUUUU RNAcompete
Ray et al.(2013)
RNCMPT00012 		0.941
orb2
M120_0.6 		Drosophila melanogaster KUUUKKK RNAcompete
Ray et al.(2013)
RNCMPT00126 		0.855
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSORLP00000000893 RRM 363 428
ENSORLP00000000893 RRM 471 540
ENSORLP00000000895 RRM 398 463
ENSORLP00000000895 RRM 506 575

Links

Other RRM family RBPs
Other Oryzias latipes RBPs

152 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
cpeb3 Danio rerio ENSDARG00000060103 I 0.985
CPEB3 Gasterosteus aculeatus ENSGACG00000002944 I 0.978
CPEB3 Takifugu rubripes ENSTRUG00000011309 I 0.971
CPEB3 Bos taurus ENSBTAG00000015450 I 0.971
Ame_R003954 Ailuropoda melanoleuca Ame_R003954 I 0.971
Cpeb3 Mus musculus ENSMUSG00000039652 I 0.971
CPEB3 Taeniopygia guttata ENSTGUG00000008988 I 0.971
LOC100392612 Callithrix jacchus ENSCJAG00000008495 I 0.971
CPEB3 Tupaia belangeri ENSTBEG00000013125 I 0.971
cpeb3 Xenopus tropicalis ENSXETG00000012190 I 0.971
CPEB3 Anolis carolinensis ENSACAG00000006335 I 0.971
CPEB3 Meleagris gallopavo ENSMGAG00000009148 I 0.971
CPEB3 Loxodonta africana ENSLAFG00000018716 I 0.971
CPEB3 Gorilla gorilla ENSGGOG00000016441 I 0.971
CPEB3 Microcebus murinus ENSMICG00000017842 I 0.971
CPEB3 Macaca mulatta ENSMMUG00000015050 I 0.971
CPEB3 Monodelphis domestica ENSMODG00000006673 I 0.971
CPEB3 Sus scrofa ENSSSCG00000010468 I 0.971
CPEB3 Gallus gallus ENSGALG00000006912 I 0.971
CPEB3 Canis familiaris ENSCAFG00000007423 I 0.971
ENSPPYG00000002481 Pongo pygmaeus ENSPPYG00000002481 I 0.971
CPEB3 Oryctolagus cuniculus ENSOCUG00000010454 I 0.971
CPEB3 Homo sapiens ENSG00000107864 I 0.971
CPEB3 Pan troglodytes ENSPTRG00000002753 I 0.971
Cpeb3 Rattus norvegicus ENSRNOG00000020689 I 0.971
CPEB3 Tetraodon nigroviridis ENSTNIG00000004021 I 0.964
CPEB3 Ornithorhynchus anatinus ENSOANG00000015723 I 0.964
CPEB3 Equus caballus ENSECAG00000000077 I 0.964
CPEB3 Choloepus hoffmanni ENSCHOG00000000272 I 0.964
CPEB3 Sorex araneus ENSSARG00000001994 I 0.964
CPEB3 Echinops telfairi ENSETEG00000000111 I 0.963
CPEB3 Macropus eugenii ENSMEUG00000009948 I 0.963
CPEB4 Danio rerio ENSDARG00000060495 I 0.942
CPEB4 Takifugu rubripes ENSTRUG00000010692 I 0.942
CPEB4 Oryzias latipes ENSORLG00000001711 I 0.942
CPEB4 Gasterosteus aculeatus ENSGACG00000020430 I 0.942
CPEB2 Gorilla gorilla ENSGGOG00000004449 I 0.941
CPEB2 Gallus gallus ENSGALG00000014516 I 0.941
CPEB2 Macropus eugenii ENSMEUG00000008074 I 0.941
CPEB2 Monodelphis domestica ENSMODG00000001149 I 0.941
Cpeb2 Dipodomys ordii ENSDORG00000015311 I 0.941
CPEB2 Macaca mulatta ENSMMUG00000001384 I 0.941
CPEB2 Loxodonta africana ENSLAFG00000007142 I 0.941
CPEB2 Equus caballus ENSECAG00000008722 I 0.941
ENSPPYG00000014613 Pongo pygmaeus ENSPPYG00000014613 I 0.941
CPEB2 Homo sapiens ENSG00000137449 D 0.941
CPEB2 Meleagris gallopavo ENSMGAG00000005200 I 0.941
CPEB2 Otolemur garnettii ENSOGAG00000011237 I 0.941
CPEB2 Canis familiaris ENSCAFG00000015372 I 0.941
XR_025355.1 Pan troglodytes ENSPTRG00000015924 I 0.941
CPEB2 Taeniopygia guttata ENSTGUG00000009822 I 0.941
CPEB2 Cavia porcellus ENSCPOG00000001180 I 0.941
LOC100402805 Callithrix jacchus ENSCJAG00000012227 I 0.941
CPEB2 Choloepus hoffmanni ENSCHOG00000003058 I 0.941
Ame_R004097 Ailuropoda melanoleuca Ame_R004097 I 0.941
CPEB2 Oryctolagus cuniculus ENSOCUG00000007950 I 0.941
CPEB2 Sus scrofa ENSSSCG00000008736 I 0.941
Cpeb2 Mus musculus ENSMUSG00000039782 I 0.941
CPEB2 Tursiops truncatus ENSTTRG00000003940 I 0.941
CPEB2 Bos taurus ENSBTAG00000019847 I 0.941
CPEB4 Homo sapiens ENSG00000113742 D 0.934
CPEB4 Erinaceus europaeus ENSEEUG00000010887 I 0.934
CPEB4 Callithrix jacchus ENSCJAG00000019166 I 0.934
Ame_R004815 Ailuropoda melanoleuca Ame_R004815 I 0.934
CPEB4 Anolis carolinensis ENSACAG00000015039 I 0.934
CPEB4 Cavia porcellus ENSCPOG00000015530 I 0.934
ADH10187 Xenopus laevis ADH10187 I 0.934
A7Z087_BOVIN Bos taurus ENSBTAG00000009995 I 0.934
CPEB4 Gasterosteus aculeatus ENSGACG00000018422 I 0.934
LOC100058918 Equus caballus ENSECAG00000016921 I 0.934
CPEB4 Myotis lucifugus ENSMLUG00000014640 I 0.934
CPEB4 Pteropus vampyrus ENSPVAG00000007863 I 0.934
CPEB4 Tupaia belangeri ENSTBEG00000001429 I 0.934
CPEB4 Oryctolagus cuniculus ENSOCUG00000008971 I 0.934
CPEB4 Tarsius syrichta ENSTSYG00000003136 I 0.934
ENSPPYG00000016058 Pongo pygmaeus ENSPPYG00000016058 I 0.934
CPEB4 Taeniopygia guttata ENSTGUG00000000329 I 0.934
CPEB4 Pan troglodytes ENSPTRG00000017545 I 0.934
CPEB4 Takifugu rubripes ENSTRUG00000010947 I 0.934
Cpeb4 Mus musculus ENSMUSG00000020300 I 0.934
CPEB4 Monodelphis domestica ENSMODG00000006036 I 0.934
CPEB4 Gorilla gorilla ENSGGOG00000010097 I 0.934
CPEB4 Otolemur garnettii ENSOGAG00000004243 I 0.934
CPEB4 Oryzias latipes ENSORLG00000007328 I 0.934
CPEB4 Loxodonta africana ENSLAFG00000016030 I 0.934
Cpeb4 Rattus norvegicus ENSRNOG00000033169 I 0.934
CPEB4 Spermophilus tridecemlineatus ENSSTOG00000006077 I 0.934
CPEB4 Ochotona princeps ENSOPRG00000002868 I 0.934
CPEB4 Procavia capensis ENSPCAG00000007021 I 0.934
CPEB4 Tetraodon nigroviridis ENSTNIG00000017077 I 0.934
ENSACAG00000012015 Anolis carolinensis ENSACAG00000012015 I 0.934
CPEB2 Ornithorhynchus anatinus ENSOANG00000003552 I 0.934
CPEB4 Canis familiaris ENSCAFG00000016761 I 0.928
CPEB4 Macaca mulatta ENSMMUG00000019926 I 0.927
CPEB4 Ornithorhynchus anatinus ENSOANG00000003990 I 0.921
CPEB4 Gallus gallus ENSGALG00000014074 I 0.921
CPEB4 Meleagris gallopavo ENSMGAG00000003660 I 0.921
CPEB2 Oryzias latipes ENSORLG00000016222 I 0.920
CPEB2 Tetraodon nigroviridis ENSTNIG00000017678 I 0.920
CPEB4 Sorex araneus ENSSARG00000013389 I 0.920
gw.572.2.1 Branchiostoma floridae gw.572.2.1 I 0.912
CPEB2 Takifugu rubripes ENSTRUG00000013956 I 0.912
CPEB2 Gasterosteus aculeatus ENSGACG00000013966 I 0.906
fgenesh2_pg.scaffold_143000050 Branchiostoma floridae fgenesh2_pg.scaffold_143000050 I 0.905
nasonia_NCBI_hmm338954 Nasonia vitripennis nasonia_NCBI_hmm338954 I 0.898
CPEB2 Pteropus vampyrus ENSPVAG00000007732 I 0.897
XP_789277.1 Strongylocentrotus purpuratus XP_789277.1 I 0.891
XP_001187928.1 Strongylocentrotus purpuratus XP_001187928.1 I 0.891
DGIL_AUG5s10609g1t1 Acyrtosiphon pisum DGIL_AUG5s10609g1t1 I 0.890
CPEB3 Pteropus vampyrus ENSPVAG00000007664 I 0.890
D3ZHK8_RAT Rattus norvegicus ENSRNOG00000005043 I 0.882
ISCW010113 Ixodes scapularis ISCW010113 I 0.877
GF10140 Drosophila ananassae FBgn0087181 I 0.876
cpeb2 Xenopus tropicalis ENSXETG00000020324 I 0.876
CPEB3 Procavia capensis ENSPCAG00000012417 I 0.875
GH16131 Drosophila grimshawi FBgn0123602 I 0.875
GE21274 Drosophila yakuba FBgn0238542 I 0.869
orb2 Drosophila melanogaster FBgn0262573 D 0.869
GJ12289 Drosophila virilis FBgn0199538 I 0.869
GL20808 Drosophila persimilis FBgn0158403 I 0.869
GA19094-RA Drosophila pseudoobscura FBgn0079092 I 0.869
GI12400 Drosophila mojavensis FBgn0135157 I 0.869
GG15051 Drosophila erecta FBgn0107305 I 0.869
GK17460 Drosophila willistoni FBgn0219459 I 0.869
BGIBMGA001827 Bombyx mori BGIBMGA001827 I 0.869
PHUM335520 Pediculus humanus PHUM335520 I 0.860
amel4_ncbi_hmm4978 Apis mellifera amel4_ncbi_hmm4978 I 0.855
CPEB4 Vicugna pacos ENSVPAG00000010897 I 0.847
CPEB2 Vicugna pacos ENSVPAG00000006185 I 0.846
CPEB2 Sorex araneus ENSSARG00000010559 I 0.846
CPEB2 Danio rerio ENSDARG00000052604 I 0.846
e_gw1.24.94.1 Capitella teleta e_gw1.24.94.1 I 0.846
e_gw1.21.3.1 Lottia gigantea e_gw1.21.3.1 I 0.832
e_gw.6.76.1 Nematostella vectensis e_gw.6.76.1 I 0.832
CPEB4 Echinops telfairi ENSETEG00000012142 I 0.826
XP_002159261.1 Hydra magnipapillata XP_002159261.1 I 0.819
ENSCING00000001633 Ciona intestinalis ENSCING00000001633 I 0.814
PASA_GEN_0800168 Daphnia pulex PASA_GEN_0800168 I 0.814
AGAP002296 Anopheles gambiae AGAP002296 I 0.804
CPEB3 Tursiops truncatus ENSTTRG00000012334 I 0.801
fgeneshTA2_pg.C_scaffold_8000081 Trichoplax adhaerens fgeneshTA2_pg.C_scaffold_8000081 I 0.797
CPEB4 Sus scrofa ENSSSCG00000016981 I 0.791
111676 Helobdella robusta 111676 I 0.790
SNAPOd2T00005918001 Oikopleura dioica SNAPOd2T00005918001 I 0.761
cpeb4 Xenopus tropicalis ENSXETG00000012731 I 0.754
CPEB3 Myotis lucifugus ENSMLUG00000009474 I 0.752
CPEB3 Vicugna pacos ENSVPAG00000002144 I 0.752
CPEB3 Otolemur garnettii ENSOGAG00000002002 I 0.735
CPEB4 Tetraodon nigroviridis ENSTNIG00000018221 I 0.730
AAEL012065 Aedes aegypti AAEL012065 I 0.727
CPEB3 Tarsius syrichta ENSTSYG00000003928 I 0.721