orb2 (Drosophila melanogaster)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 FBgn0262573 T44429_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
orb2
M120_0.6		 Drosophila melanogaster KUUUKKK RNAcompete
Ray et al.(2013)
RNCMPT00126 		(Direct)

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
CPEB2
M012_0.6 		Homo sapiens CHUUUUU RNAcompete
Ray et al.(2013)
RNCMPT00012 		0.902
CPEB4
M149_0.6 		Homo sapiens UUUUUU RNAcompete
Ray et al.(2013)
RNCMPT00158 		0.870
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M120_0.6 RRM 51 116
M120_0.6 RRM 159 223

RNA Binding Domains

Protein ID Domain From To Sequence
FBpp0293476 RRM 449 514
FBpp0293476 RRM 557 621
FBpp0293477 RRM 449 514
FBpp0293477 RRM 557 621
FBpp0293478 RRM 449 514
FBpp0293478 RRM 557 621
FBpp0293479 RRM 296 361
FBpp0293479 RRM 404 468
FBpp0293483 RRM 449 514
FBpp0293483 RRM 557 621

Links

Other RRM family RBPs
Other Drosophila melanogaster RBPs

150 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
GJ12289 Drosophila virilis FBgn0199538 I 1.000
GL20808 Drosophila persimilis FBgn0158403 I 1.000
GI12400 Drosophila mojavensis FBgn0135157 I 1.000
GG15051 Drosophila erecta FBgn0107305 I 1.000
GK17460 Drosophila willistoni FBgn0219459 I 1.000
GA19094-RA Drosophila pseudoobscura FBgn0079092 I 1.000
GE21274 Drosophila yakuba FBgn0238542 I 1.000
GF10140 Drosophila ananassae FBgn0087181 I 0.992
GH16131 Drosophila grimshawi FBgn0123602 I 0.985
DGIL_AUG5s10609g1t1 Acyrtosiphon pisum DGIL_AUG5s10609g1t1 I 0.954
BGIBMGA001827 Bombyx mori BGIBMGA001827 I 0.932
amel4_ncbi_hmm4978 Apis mellifera amel4_ncbi_hmm4978 I 0.932
PHUM335520 Pediculus humanus PHUM335520 I 0.931
nasonia_NCBI_hmm338954 Nasonia vitripennis nasonia_NCBI_hmm338954 I 0.920
CPEB2 Cavia porcellus ENSCPOG00000001180 I 0.917
CPEB2 Macaca mulatta ENSMMUG00000001384 I 0.917
CPEB2 Choloepus hoffmanni ENSCHOG00000003058 I 0.917
CPEB2 Canis familiaris ENSCAFG00000015372 I 0.917
CPEB2 Taeniopygia guttata ENSTGUG00000009822 I 0.917
CPEB2 Monodelphis domestica ENSMODG00000001149 I 0.917
LOC100402805 Callithrix jacchus ENSCJAG00000012227 I 0.917
CPEB2 Sus scrofa ENSSSCG00000008736 I 0.917
CPEB2 Loxodonta africana ENSLAFG00000007142 I 0.917
CPEB2 Homo sapiens ENSG00000137449 D 0.917
CPEB2 Gorilla gorilla ENSGGOG00000004449 I 0.917
CPEB2 Bos taurus ENSBTAG00000019847 I 0.917
CPEB2 Macropus eugenii ENSMEUG00000008074 I 0.917
Cpeb2 Dipodomys ordii ENSDORG00000015311 I 0.917
CPEB2 Meleagris gallopavo ENSMGAG00000005200 I 0.917
CPEB2 Equus caballus ENSECAG00000008722 I 0.917
XR_025355.1 Pan troglodytes ENSPTRG00000015924 I 0.917
Cpeb2 Mus musculus ENSMUSG00000039782 I 0.917
ENSACAG00000012015 Anolis carolinensis ENSACAG00000012015 I 0.917
Ame_R004097 Ailuropoda melanoleuca Ame_R004097 I 0.917
CPEB2 Tursiops truncatus ENSTTRG00000003940 I 0.917
CPEB2 Otolemur garnettii ENSOGAG00000011237 I 0.917
CPEB2 Gallus gallus ENSGALG00000014516 I 0.917
CPEB2 Oryctolagus cuniculus ENSOCUG00000007950 I 0.917
ENSPPYG00000014613 Pongo pygmaeus ENSPPYG00000014613 I 0.917
ISCW010113 Ixodes scapularis ISCW010113 I 0.910
fgenesh2_pg.scaffold_143000050 Branchiostoma floridae fgenesh2_pg.scaffold_143000050 I 0.909
CPEB2 Ornithorhynchus anatinus ENSOANG00000003552 I 0.909
gw.572.2.1 Branchiostoma floridae gw.572.2.1 I 0.902
CPEB2 Gasterosteus aculeatus ENSGACG00000013966 I 0.894
CPEB2 Tetraodon nigroviridis ENSTNIG00000017678 I 0.894
CPEB2 Oryzias latipes ENSORLG00000016222 I 0.894
CPEB2 Pteropus vampyrus ENSPVAG00000007732 I 0.893
CPEB4 Pteropus vampyrus ENSPVAG00000007863 I 0.890
CPEB4 Gorilla gorilla ENSGGOG00000010097 I 0.890
CPEB4 Loxodonta africana ENSLAFG00000016030 I 0.890
CPEB4 Otolemur garnettii ENSOGAG00000004243 I 0.890
CPEB4 Monodelphis domestica ENSMODG00000006036 I 0.890
ENSPPYG00000016058 Pongo pygmaeus ENSPPYG00000016058 I 0.890
Cpeb4 Mus musculus ENSMUSG00000020300 I 0.890
CPEB4 Oryctolagus cuniculus ENSOCUG00000008971 I 0.890
CPEB4 Myotis lucifugus ENSMLUG00000014640 I 0.890
CPEB4 Pan troglodytes ENSPTRG00000017545 I 0.890
CPEB4 Procavia capensis ENSPCAG00000007021 I 0.890
CPEB4 Ochotona princeps ENSOPRG00000002868 I 0.890
CPEB4 Tupaia belangeri ENSTBEG00000001429 I 0.890
CPEB4 Callithrix jacchus ENSCJAG00000019166 I 0.890
CPEB4 Cavia porcellus ENSCPOG00000015530 I 0.890
ADH10187 Xenopus laevis ADH10187 I 0.890
Ame_R004815 Ailuropoda melanoleuca Ame_R004815 I 0.890
A7Z087_BOVIN Bos taurus ENSBTAG00000009995 I 0.890
CPEB4 Tarsius syrichta ENSTSYG00000003136 I 0.890
CPEB4 Takifugu rubripes ENSTRUG00000010947 I 0.890
CPEB4 Anolis carolinensis ENSACAG00000015039 I 0.890
LOC100058918 Equus caballus ENSECAG00000016921 I 0.890
CPEB4 Taeniopygia guttata ENSTGUG00000000329 I 0.890
Cpeb4 Rattus norvegicus ENSRNOG00000033169 I 0.890
CPEB4 Homo sapiens ENSG00000113742 D 0.890
CPEB4 Erinaceus europaeus ENSEEUG00000010887 I 0.890
XP_789277.1 Strongylocentrotus purpuratus XP_789277.1 I 0.887
XP_001187928.1 Strongylocentrotus purpuratus XP_001187928.1 I 0.887
CPEB2 Takifugu rubripes ENSTRUG00000013956 I 0.886
CPEB4 Spermophilus tridecemlineatus ENSSTOG00000006077 I 0.883
CPEB4 Canis familiaris ENSCAFG00000016761 I 0.883
CPEB4 Gasterosteus aculeatus ENSGACG00000018422 I 0.882
CPEB4 Gasterosteus aculeatus ENSGACG00000020430 I 0.882
CPEB4 Oryzias latipes ENSORLG00000001711 I 0.882
CPEB4 Takifugu rubripes ENSTRUG00000010692 I 0.882
CPEB4 Oryzias latipes ENSORLG00000007328 I 0.882
CPEB4 Macaca mulatta ENSMMUG00000019926 I 0.882
CPEB4 Tetraodon nigroviridis ENSTNIG00000017077 I 0.882
CPEB4 Danio rerio ENSDARG00000060495 I 0.882
CPEB4 Gallus gallus ENSGALG00000014074 I 0.877
D3ZHK8_RAT Rattus norvegicus ENSRNOG00000005043 I 0.877
CPEB4 Meleagris gallopavo ENSMGAG00000003660 I 0.877
CPEB4 Ornithorhynchus anatinus ENSOANG00000003990 I 0.877
cpeb3 Xenopus tropicalis ENSXETG00000012190 I 0.876
CPEB3 Pan troglodytes ENSPTRG00000002753 I 0.876
CPEB3 Sus scrofa ENSSSCG00000010468 I 0.876
CPEB3 Tupaia belangeri ENSTBEG00000013125 I 0.876
Cpeb3 Rattus norvegicus ENSRNOG00000020689 I 0.876
CPEB3 Taeniopygia guttata ENSTGUG00000008988 I 0.876
ENSPPYG00000002481 Pongo pygmaeus ENSPPYG00000002481 I 0.876
CPEB3 Meleagris gallopavo ENSMGAG00000009148 I 0.876
CPEB3 Homo sapiens ENSG00000107864 I 0.876
CPEB3 Gallus gallus ENSGALG00000006912 I 0.876
CPEB3 Gorilla gorilla ENSGGOG00000016441 I 0.876
CPEB3 Echinops telfairi ENSETEG00000000111 I 0.876
CPEB3 Canis familiaris ENSCAFG00000007423 I 0.876
Ame_R003954 Ailuropoda melanoleuca Ame_R003954 I 0.876
CPEB3 Anolis carolinensis ENSACAG00000006335 I 0.876
CPEB3 Bos taurus ENSBTAG00000015450 I 0.876
CPEB3 Loxodonta africana ENSLAFG00000018716 I 0.876
LOC100392612 Callithrix jacchus ENSCJAG00000008495 I 0.876
CPEB3 Monodelphis domestica ENSMODG00000006673 I 0.876
CPEB3 Macaca mulatta ENSMMUG00000015050 I 0.876
CPEB3 Oryctolagus cuniculus ENSOCUG00000010454 I 0.876
Cpeb3 Mus musculus ENSMUSG00000039652 I 0.876
CPEB3 Microcebus murinus ENSMICG00000017842 I 0.876
CPEB4 Sorex araneus ENSSARG00000013389 I 0.875
cpeb2 Xenopus tropicalis ENSXETG00000020324 I 0.871
e_gw1.24.94.1 Capitella teleta e_gw1.24.94.1 I 0.870
CPEB3 Equus caballus ENSECAG00000000077 I 0.870
cpeb3 Danio rerio ENSDARG00000060103 I 0.870
CPEB3 Choloepus hoffmanni ENSCHOG00000000272 I 0.870
CPEB3 Ornithorhynchus anatinus ENSOANG00000015723 I 0.870
CPEB3 Sorex araneus ENSSARG00000001994 I 0.870
CPEB3 Oryzias latipes ENSORLG00000000726 I 0.869
CPEB3 Macropus eugenii ENSMEUG00000009948 I 0.869
CPEB3 Pteropus vampyrus ENSPVAG00000007664 I 0.864
e_gw1.21.3.1 Lottia gigantea e_gw1.21.3.1 I 0.863
CPEB3 Takifugu rubripes ENSTRUG00000011309 I 0.862
CPEB3 Tetraodon nigroviridis ENSTNIG00000004021 I 0.855
CPEB3 Gasterosteus aculeatus ENSGACG00000002944 I 0.854
e_gw.6.76.1 Nematostella vectensis e_gw.6.76.1 I 0.847
AGAP002296 Anopheles gambiae AGAP002296 I 0.842
ENSCING00000001633 Ciona intestinalis ENSCING00000001633 I 0.838
PASA_GEN_0800168 Daphnia pulex PASA_GEN_0800168 I 0.838
fgeneshTA2_pg.C_scaffold_8000081 Trichoplax adhaerens fgeneshTA2_pg.C_scaffold_8000081 I 0.827
CPEB2 Vicugna pacos ENSVPAG00000006185 I 0.818
CPEB2 Sorex araneus ENSSARG00000010559 I 0.818
CPEB4 Vicugna pacos ENSVPAG00000010897 I 0.810
CPEB3 Procavia capensis ENSPCAG00000012417 I 0.803
XP_002159261.1 Hydra magnipapillata XP_002159261.1 I 0.797
CPEB2 Danio rerio ENSDARG00000052604 I 0.789
CPEB4 Echinops telfairi ENSETEG00000012142 I 0.781
SNAPOd2T00005918001 Oikopleura dioica SNAPOd2T00005918001 I 0.774
111676 Helobdella robusta 111676 I 0.768
AAEL012065 Aedes aegypti AAEL012065 I 0.754
CPEB3 Tursiops truncatus ENSTTRG00000012334 I 0.752
79994 Helobdella robusta 79994 I 0.741
CPEB4 Sus scrofa ENSSSCG00000016981 I 0.719
CPEB3 Vicugna pacos ENSVPAG00000002144 I 0.713
CPEB3 Myotis lucifugus ENSMLUG00000009474 I 0.713
69117 Helobdella robusta 69117 N 0.707