CPEB3 (Tetraodon nigroviridis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSTNIG00000004021 T42023_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
CPEB4
M149_0.6 		Homo sapiens UUUUUU RNAcompete
Ray et al.(2013)
RNCMPT00158 		0.893
CPEB2
M012_0.6 		Homo sapiens CHUUUUU RNAcompete
Ray et al.(2013)
RNCMPT00012 		0.886
orb2
M120_0.6 		Drosophila melanogaster KUUUKKK RNAcompete
Ray et al.(2013)
RNCMPT00126 		0.849
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSTNIP00000006631 RRM 51 117
ENSTNIP00000006631 RRM 159 229

Links

Other RRM family RBPs
Other Tetraodon nigroviridis RBPs

151 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
CPEB3 Gasterosteus aculeatus ENSGACG00000002944 I 0.986
CPEB3 Takifugu rubripes ENSTRUG00000011309 I 0.986
cpeb3 Danio rerio ENSDARG00000060103 I 0.978
CPEB3 Equus caballus ENSECAG00000000077 I 0.964
CPEB3 Ornithorhynchus anatinus ENSOANG00000015723 I 0.964
CPEB3 Choloepus hoffmanni ENSCHOG00000000272 I 0.964
CPEB3 Macropus eugenii ENSMEUG00000009948 I 0.964
CPEB3 Oryzias latipes ENSORLG00000000726 I 0.964
CPEB3 Sorex araneus ENSSARG00000001994 I 0.964
CPEB3 Gorilla gorilla ENSGGOG00000016441 I 0.957
CPEB3 Oryctolagus cuniculus ENSOCUG00000010454 I 0.957
LOC100392612 Callithrix jacchus ENSCJAG00000008495 I 0.957
Cpeb3 Mus musculus ENSMUSG00000039652 I 0.957
CPEB3 Loxodonta africana ENSLAFG00000018716 I 0.957
CPEB3 Microcebus murinus ENSMICG00000017842 I 0.957
CPEB3 Meleagris gallopavo ENSMGAG00000009148 I 0.957
CPEB3 Anolis carolinensis ENSACAG00000006335 I 0.957
CPEB3 Macaca mulatta ENSMMUG00000015050 I 0.957
CPEB3 Bos taurus ENSBTAG00000015450 I 0.957
ENSPPYG00000002481 Pongo pygmaeus ENSPPYG00000002481 I 0.957
Ame_R003954 Ailuropoda melanoleuca Ame_R003954 I 0.957
CPEB3 Monodelphis domestica ENSMODG00000006673 I 0.957
CPEB3 Canis familiaris ENSCAFG00000007423 I 0.957
CPEB3 Gallus gallus ENSGALG00000006912 I 0.957
CPEB3 Homo sapiens ENSG00000107864 I 0.957
Cpeb3 Rattus norvegicus ENSRNOG00000020689 I 0.957
CPEB3 Tupaia belangeri ENSTBEG00000013125 I 0.957
cpeb3 Xenopus tropicalis ENSXETG00000012190 I 0.957
CPEB3 Sus scrofa ENSSSCG00000010468 I 0.957
CPEB3 Taeniopygia guttata ENSTGUG00000008988 I 0.957
CPEB3 Pan troglodytes ENSPTRG00000002753 I 0.957
CPEB3 Echinops telfairi ENSETEG00000000111 I 0.949
CPEB2 Takifugu rubripes ENSTRUG00000013956 I 0.935
CPEB2 Tetraodon nigroviridis ENSTNIG00000017678 I 0.928
CPEB4 Takifugu rubripes ENSTRUG00000010692 I 0.928
CPEB4 Spermophilus tridecemlineatus ENSSTOG00000006077 I 0.928
CPEB2 Ornithorhynchus anatinus ENSOANG00000003552 I 0.928
CPEB4 Oryzias latipes ENSORLG00000001711 I 0.928
CPEB4 Danio rerio ENSDARG00000060495 I 0.928
CPEB2 Oryzias latipes ENSORLG00000016222 I 0.928
CPEB4 Gasterosteus aculeatus ENSGACG00000020430 I 0.928
CPEB2 Macropus eugenii ENSMEUG00000008074 I 0.920
CPEB4 Gasterosteus aculeatus ENSGACG00000018422 I 0.920
CPEB2 Gallus gallus ENSGALG00000014516 I 0.920
CPEB4 Loxodonta africana ENSLAFG00000016030 I 0.920
CPEB2 Loxodonta africana ENSLAFG00000007142 I 0.920
CPEB4 Gorilla gorilla ENSGGOG00000010097 I 0.920
CPEB2 Homo sapiens ENSG00000137449 D 0.920
CPEB4 Homo sapiens ENSG00000113742 D 0.920
CPEB2 Gorilla gorilla ENSGGOG00000004449 I 0.920
Cpeb2 Mus musculus ENSMUSG00000039782 I 0.920
XR_025355.1 Pan troglodytes ENSPTRG00000015924 I 0.920
CPEB4 Pan troglodytes ENSPTRG00000017545 I 0.920
ENSPPYG00000016058 Pongo pygmaeus ENSPPYG00000016058 I 0.920
ENSPPYG00000014613 Pongo pygmaeus ENSPPYG00000014613 I 0.920
CPEB4 Procavia capensis ENSPCAG00000007021 I 0.920
CPEB4 Pteropus vampyrus ENSPVAG00000007863 I 0.920
Cpeb4 Rattus norvegicus ENSRNOG00000033169 I 0.920
CPEB2 Taeniopygia guttata ENSTGUG00000009822 I 0.920
CPEB4 Taeniopygia guttata ENSTGUG00000000329 I 0.920
CPEB4 Tupaia belangeri ENSTBEG00000001429 I 0.920
CPEB2 Sus scrofa ENSSSCG00000008736 I 0.920
CPEB4 Oryzias latipes ENSORLG00000007328 I 0.920
CPEB4 Ochotona princeps ENSOPRG00000002868 I 0.920
CPEB4 Monodelphis domestica ENSMODG00000006036 I 0.920
CPEB2 Monodelphis domestica ENSMODG00000001149 I 0.920
CPEB2 Macaca mulatta ENSMMUG00000001384 I 0.920
CPEB4 Myotis lucifugus ENSMLUG00000014640 I 0.920
Cpeb4 Mus musculus ENSMUSG00000020300 I 0.920
CPEB4 Tetraodon nigroviridis ENSTNIG00000017077 I 0.920
CPEB2 Otolemur garnettii ENSOGAG00000011237 I 0.920
CPEB4 Otolemur garnettii ENSOGAG00000004243 I 0.920
CPEB4 Oryctolagus cuniculus ENSOCUG00000008971 I 0.920
CPEB2 Oryctolagus cuniculus ENSOCUG00000007950 I 0.920
CPEB2 Meleagris gallopavo ENSMGAG00000005200 I 0.920
CPEB4 Erinaceus europaeus ENSEEUG00000010887 I 0.920
CPEB4 Anolis carolinensis ENSACAG00000015039 I 0.920
A7Z087_BOVIN Bos taurus ENSBTAG00000009995 I 0.920
CPEB2 Bos taurus ENSBTAG00000019847 I 0.920
CPEB2 Canis familiaris ENSCAFG00000015372 I 0.920
CPEB4 Takifugu rubripes ENSTRUG00000010947 I 0.920
CPEB4 Tarsius syrichta ENSTSYG00000003136 I 0.920
LOC100058918 Equus caballus ENSECAG00000016921 I 0.920
Ame_R004097 Ailuropoda melanoleuca Ame_R004097 I 0.920
ADH10187 Xenopus laevis ADH10187 I 0.920
CPEB2 Tursiops truncatus ENSTTRG00000003940 I 0.920
CPEB2 Choloepus hoffmanni ENSCHOG00000003058 I 0.920
Ame_R004815 Ailuropoda melanoleuca Ame_R004815 I 0.920
CPEB2 Cavia porcellus ENSCPOG00000001180 I 0.920
Cpeb2 Dipodomys ordii ENSDORG00000015311 I 0.920
CPEB2 Equus caballus ENSECAG00000008722 I 0.920
CPEB4 Callithrix jacchus ENSCJAG00000019166 I 0.920
LOC100402805 Callithrix jacchus ENSCJAG00000012227 I 0.920
CPEB4 Cavia porcellus ENSCPOG00000015530 I 0.920
CPEB4 Canis familiaris ENSCAFG00000016761 I 0.914
CPEB4 Macaca mulatta ENSMMUG00000019926 I 0.913
ENSACAG00000012015 Anolis carolinensis ENSACAG00000012015 I 0.913
CPEB4 Gallus gallus ENSGALG00000014074 I 0.907
CPEB4 Meleagris gallopavo ENSMGAG00000003660 I 0.907
CPEB4 Ornithorhynchus anatinus ENSOANG00000003990 I 0.907
CPEB2 Gasterosteus aculeatus ENSGACG00000013966 I 0.906
CPEB4 Sorex araneus ENSSARG00000013389 I 0.906
gw.572.2.1 Branchiostoma floridae gw.572.2.1 I 0.906
nasonia_NCBI_hmm338954 Nasonia vitripennis nasonia_NCBI_hmm338954 I 0.899
fgenesh2_pg.scaffold_143000050 Branchiostoma floridae fgenesh2_pg.scaffold_143000050 I 0.899
XP_789277.1 Strongylocentrotus purpuratus XP_789277.1 I 0.885
XP_001187928.1 Strongylocentrotus purpuratus XP_001187928.1 I 0.885
CPEB2 Pteropus vampyrus ENSPVAG00000007732 I 0.877
CPEB3 Pteropus vampyrus ENSPVAG00000007664 I 0.877
ISCW010113 Ixodes scapularis ISCW010113 I 0.871
DGIL_AUG5s10609g1t1 Acyrtosiphon pisum DGIL_AUG5s10609g1t1 I 0.870
cpeb2 Xenopus tropicalis ENSXETG00000020324 I 0.870
D3ZHK8_RAT Rattus norvegicus ENSRNOG00000005043 I 0.869
GF10140 Drosophila ananassae FBgn0087181 I 0.862
CPEB3 Procavia capensis ENSPCAG00000012417 I 0.862
orb2 Drosophila melanogaster FBgn0262573 D 0.855
GE21274 Drosophila yakuba FBgn0238542 I 0.855
GK17460 Drosophila willistoni FBgn0219459 I 0.855
GA19094-RA Drosophila pseudoobscura FBgn0079092 I 0.855
GL20808 Drosophila persimilis FBgn0158403 I 0.855
GG15051 Drosophila erecta FBgn0107305 I 0.855
BGIBMGA001827 Bombyx mori BGIBMGA001827 I 0.855
GJ12289 Drosophila virilis FBgn0199538 I 0.855
GH16131 Drosophila grimshawi FBgn0123602 I 0.855
GI12400 Drosophila mojavensis FBgn0135157 I 0.855
amel4_ncbi_hmm4978 Apis mellifera amel4_ncbi_hmm4978 I 0.849
CPEB2 Danio rerio ENSDARG00000052604 I 0.848
PHUM335520 Pediculus humanus PHUM335520 I 0.841
e_gw1.24.94.1 Capitella teleta e_gw1.24.94.1 I 0.841
e_gw.6.76.1 Nematostella vectensis e_gw.6.76.1 I 0.833
e_gw1.21.3.1 Lottia gigantea e_gw1.21.3.1 I 0.833
CPEB4 Vicugna pacos ENSVPAG00000010897 I 0.827
CPEB2 Vicugna pacos ENSVPAG00000006185 I 0.826
CPEB2 Sorex araneus ENSSARG00000010559 I 0.826
PASA_GEN_0800168 Daphnia pulex PASA_GEN_0800168 I 0.817
ENSCING00000001633 Ciona intestinalis ENSCING00000001633 I 0.817
CPEB4 Echinops telfairi ENSETEG00000012142 I 0.813
XP_002159261.1 Hydra magnipapillata XP_002159261.1 I 0.807
CPEB3 Tursiops truncatus ENSTTRG00000012334 I 0.796
fgeneshTA2_pg.C_scaffold_8000081 Trichoplax adhaerens fgeneshTA2_pg.C_scaffold_8000081 I 0.793
AGAP002296 Anopheles gambiae AGAP002296 I 0.786
111676 Helobdella robusta 111676 I 0.786
CPEB4 Sus scrofa ENSSSCG00000016981 I 0.759
CPEB3 Myotis lucifugus ENSMLUG00000009474 I 0.754
CPEB3 Vicugna pacos ENSVPAG00000002144 I 0.754
SNAPOd2T00005918001 Oikopleura dioica SNAPOd2T00005918001 I 0.743
CPEB4 Tetraodon nigroviridis ENSTNIG00000018221 I 0.732
CPEB3 Otolemur garnettii ENSOGAG00000002002 I 0.732
cpeb4 Xenopus tropicalis ENSXETG00000012731 I 0.729
CPEB3 Tarsius syrichta ENSTSYG00000003928 I 0.717
AAEL012065 Aedes aegypti AAEL012065 I 0.709