CPEB3 (Takifugu rubripes)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSTRUG00000011309 T42316_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
CPEB4
M149_0.6 		Homo sapiens UUUUUU RNAcompete
Ray et al.(2013)
RNCMPT00158 		0.900
CPEB2
M012_0.6 		Homo sapiens CHUUUUU RNAcompete
Ray et al.(2013)
RNCMPT00012 		0.893
orb2
M120_0.6 		Drosophila melanogaster KUUUKKK RNAcompete
Ray et al.(2013)
RNCMPT00126 		0.856
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSTRUP00000028557 RRM 95 161
ENSTRUP00000028557 RRM 203 273

Links

Other RRM family RBPs
Other Takifugu rubripes RBPs

151 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
cpeb3 Danio rerio ENSDARG00000060103 I 0.986
CPEB3 Tetraodon nigroviridis ENSTNIG00000004021 I 0.986
CPEB3 Oryzias latipes ENSORLG00000000726 I 0.971
CPEB3 Gasterosteus aculeatus ENSGACG00000002944 I 0.971
CPEB3 Choloepus hoffmanni ENSCHOG00000000272 I 0.964
CPEB3 Macropus eugenii ENSMEUG00000009948 I 0.964
CPEB3 Equus caballus ENSECAG00000000077 I 0.964
CPEB3 Sorex araneus ENSSARG00000001994 I 0.964
CPEB3 Ornithorhynchus anatinus ENSOANG00000015723 I 0.964
CPEB3 Monodelphis domestica ENSMODG00000006673 I 0.957
CPEB3 Gorilla gorilla ENSGGOG00000016441 I 0.957
CPEB3 Pan troglodytes ENSPTRG00000002753 I 0.957
CPEB3 Oryctolagus cuniculus ENSOCUG00000010454 I 0.957
CPEB3 Canis familiaris ENSCAFG00000007423 I 0.957
ENSPPYG00000002481 Pongo pygmaeus ENSPPYG00000002481 I 0.957
CPEB3 Bos taurus ENSBTAG00000015450 I 0.957
Cpeb3 Mus musculus ENSMUSG00000039652 I 0.957
CPEB3 Loxodonta africana ENSLAFG00000018716 I 0.957
LOC100392612 Callithrix jacchus ENSCJAG00000008495 I 0.957
CPEB3 Microcebus murinus ENSMICG00000017842 I 0.957
CPEB3 Anolis carolinensis ENSACAG00000006335 I 0.957
Cpeb3 Rattus norvegicus ENSRNOG00000020689 I 0.957
CPEB3 Tupaia belangeri ENSTBEG00000013125 I 0.957
CPEB3 Macaca mulatta ENSMMUG00000015050 I 0.957
CPEB3 Taeniopygia guttata ENSTGUG00000008988 I 0.957
CPEB3 Homo sapiens ENSG00000107864 I 0.957
Ame_R003954 Ailuropoda melanoleuca Ame_R003954 I 0.957
CPEB3 Meleagris gallopavo ENSMGAG00000009148 I 0.957
cpeb3 Xenopus tropicalis ENSXETG00000012190 I 0.957
CPEB3 Gallus gallus ENSGALG00000006912 I 0.957
CPEB3 Sus scrofa ENSSSCG00000010468 I 0.957
CPEB3 Echinops telfairi ENSETEG00000000111 I 0.949
CPEB4 Takifugu rubripes ENSTRUG00000010692 I 0.935
CPEB4 Danio rerio ENSDARG00000060495 I 0.935
CPEB4 Gasterosteus aculeatus ENSGACG00000020430 I 0.935
CPEB2 Ornithorhynchus anatinus ENSOANG00000003552 I 0.935
CPEB4 Oryzias latipes ENSORLG00000001711 I 0.935
CPEB4 Myotis lucifugus ENSMLUG00000014640 I 0.928
CPEB2 Loxodonta africana ENSLAFG00000007142 I 0.928
CPEB4 Takifugu rubripes ENSTRUG00000010947 I 0.928
CPEB2 Gallus gallus ENSGALG00000014516 I 0.928
CPEB2 Homo sapiens ENSG00000137449 D 0.928
CPEB2 Gorilla gorilla ENSGGOG00000004449 I 0.928
CPEB4 Gorilla gorilla ENSGGOG00000010097 I 0.928
CPEB2 Meleagris gallopavo ENSMGAG00000005200 I 0.928
CPEB2 Macropus eugenii ENSMEUG00000008074 I 0.928
CPEB4 Loxodonta africana ENSLAFG00000016030 I 0.928
CPEB4 Tetraodon nigroviridis ENSTNIG00000017077 I 0.928
Cpeb2 Mus musculus ENSMUSG00000039782 I 0.928
CPEB4 Pan troglodytes ENSPTRG00000017545 I 0.928
CPEB4 Pteropus vampyrus ENSPVAG00000007863 I 0.928
XR_025355.1 Pan troglodytes ENSPTRG00000015924 I 0.928
ENSPPYG00000016058 Pongo pygmaeus ENSPPYG00000016058 I 0.928
ENSPPYG00000014613 Pongo pygmaeus ENSPPYG00000014613 I 0.928
Cpeb4 Rattus norvegicus ENSRNOG00000033169 I 0.928
CPEB2 Sus scrofa ENSSSCG00000008736 I 0.928
CPEB2 Taeniopygia guttata ENSTGUG00000009822 I 0.928
CPEB4 Taeniopygia guttata ENSTGUG00000000329 I 0.928
CPEB4 Tupaia belangeri ENSTBEG00000001429 I 0.928
CPEB4 Spermophilus tridecemlineatus ENSSTOG00000006077 I 0.928
CPEB4 Procavia capensis ENSPCAG00000007021 I 0.928
CPEB4 Oryzias latipes ENSORLG00000007328 I 0.928
CPEB4 Tarsius syrichta ENSTSYG00000003136 I 0.928
Cpeb4 Mus musculus ENSMUSG00000020300 I 0.928
CPEB4 Monodelphis domestica ENSMODG00000006036 I 0.928
CPEB2 Monodelphis domestica ENSMODG00000001149 I 0.928
CPEB4 Homo sapiens ENSG00000113742 D 0.928
CPEB2 Oryctolagus cuniculus ENSOCUG00000007950 I 0.928
CPEB4 Ochotona princeps ENSOPRG00000002868 I 0.928
CPEB2 Otolemur garnettii ENSOGAG00000011237 I 0.928
CPEB4 Otolemur garnettii ENSOGAG00000004243 I 0.928
CPEB4 Oryctolagus cuniculus ENSOCUG00000008971 I 0.928
CPEB2 Macaca mulatta ENSMMUG00000001384 I 0.928
CPEB4 Gasterosteus aculeatus ENSGACG00000018422 I 0.928
CPEB2 Choloepus hoffmanni ENSCHOG00000003058 I 0.928
LOC100402805 Callithrix jacchus ENSCJAG00000012227 I 0.928
CPEB4 Callithrix jacchus ENSCJAG00000019166 I 0.928
CPEB2 Cavia porcellus ENSCPOG00000001180 I 0.928
CPEB2 Canis familiaris ENSCAFG00000015372 I 0.928
CPEB2 Bos taurus ENSBTAG00000019847 I 0.928
Ame_R004815 Ailuropoda melanoleuca Ame_R004815 I 0.928
ADH10187 Xenopus laevis ADH10187 I 0.928
CPEB4 Anolis carolinensis ENSACAG00000015039 I 0.928
A7Z087_BOVIN Bos taurus ENSBTAG00000009995 I 0.928
CPEB4 Cavia porcellus ENSCPOG00000015530 I 0.928
Ame_R004097 Ailuropoda melanoleuca Ame_R004097 I 0.928
CPEB2 Equus caballus ENSECAG00000008722 I 0.928
LOC100058918 Equus caballus ENSECAG00000016921 I 0.928
CPEB4 Erinaceus europaeus ENSEEUG00000010887 I 0.928
CPEB2 Tursiops truncatus ENSTTRG00000003940 I 0.928
Cpeb2 Dipodomys ordii ENSDORG00000015311 I 0.928
CPEB4 Canis familiaris ENSCAFG00000016761 I 0.921
CPEB4 Macaca mulatta ENSMMUG00000019926 I 0.920
ENSACAG00000012015 Anolis carolinensis ENSACAG00000012015 I 0.920
CPEB2 Takifugu rubripes ENSTRUG00000013956 I 0.920
CPEB4 Gallus gallus ENSGALG00000014074 I 0.914
CPEB4 Meleagris gallopavo ENSMGAG00000003660 I 0.914
CPEB4 Ornithorhynchus anatinus ENSOANG00000003990 I 0.914
CPEB2 Tetraodon nigroviridis ENSTNIG00000017678 I 0.913
gw.572.2.1 Branchiostoma floridae gw.572.2.1 I 0.913
CPEB4 Sorex araneus ENSSARG00000013389 I 0.913
CPEB2 Oryzias latipes ENSORLG00000016222 I 0.913
nasonia_NCBI_hmm338954 Nasonia vitripennis nasonia_NCBI_hmm338954 I 0.906
fgenesh2_pg.scaffold_143000050 Branchiostoma floridae fgenesh2_pg.scaffold_143000050 I 0.906
CPEB2 Gasterosteus aculeatus ENSGACG00000013966 I 0.899
XP_789277.1 Strongylocentrotus purpuratus XP_789277.1 I 0.892
XP_001187928.1 Strongylocentrotus purpuratus XP_001187928.1 I 0.892
CPEB2 Pteropus vampyrus ENSPVAG00000007732 I 0.884
ISCW010113 Ixodes scapularis ISCW010113 I 0.878
DGIL_AUG5s10609g1t1 Acyrtosiphon pisum DGIL_AUG5s10609g1t1 I 0.877
CPEB3 Pteropus vampyrus ENSPVAG00000007664 I 0.877
D3ZHK8_RAT Rattus norvegicus ENSRNOG00000005043 I 0.876
GF10140 Drosophila ananassae FBgn0087181 I 0.870
cpeb2 Xenopus tropicalis ENSXETG00000020324 I 0.870
CPEB3 Procavia capensis ENSPCAG00000012417 I 0.862
orb2 Drosophila melanogaster FBgn0262573 D 0.862
GE21274 Drosophila yakuba FBgn0238542 I 0.862
BGIBMGA001827 Bombyx mori BGIBMGA001827 I 0.862
GG15051 Drosophila erecta FBgn0107305 I 0.862
GA19094-RA Drosophila pseudoobscura FBgn0079092 I 0.862
GH16131 Drosophila grimshawi FBgn0123602 I 0.862
GI12400 Drosophila mojavensis FBgn0135157 I 0.862
GJ12289 Drosophila virilis FBgn0199538 I 0.862
GL20808 Drosophila persimilis FBgn0158403 I 0.862
GK17460 Drosophila willistoni FBgn0219459 I 0.862
amel4_ncbi_hmm4978 Apis mellifera amel4_ncbi_hmm4978 I 0.856
PHUM335520 Pediculus humanus PHUM335520 I 0.848
CPEB2 Danio rerio ENSDARG00000052604 I 0.848
e_gw1.24.94.1 Capitella teleta e_gw1.24.94.1 I 0.841
CPEB4 Vicugna pacos ENSVPAG00000010897 I 0.835
CPEB2 Vicugna pacos ENSVPAG00000006185 I 0.833
CPEB2 Sorex araneus ENSSARG00000010559 I 0.833
e_gw.6.76.1 Nematostella vectensis e_gw.6.76.1 I 0.833
e_gw1.21.3.1 Lottia gigantea e_gw1.21.3.1 I 0.833
CPEB4 Echinops telfairi ENSETEG00000012142 I 0.820
XP_002159261.1 Hydra magnipapillata XP_002159261.1 I 0.814
ENSCING00000001633 Ciona intestinalis ENSCING00000001633 I 0.810
PASA_GEN_0800168 Daphnia pulex PASA_GEN_0800168 I 0.810
CPEB3 Tursiops truncatus ENSTTRG00000012334 I 0.796
fgeneshTA2_pg.C_scaffold_8000081 Trichoplax adhaerens fgeneshTA2_pg.C_scaffold_8000081 I 0.793
AGAP002296 Anopheles gambiae AGAP002296 I 0.786
111676 Helobdella robusta 111676 I 0.786
CPEB4 Sus scrofa ENSSSCG00000016981 I 0.766
CPEB3 Vicugna pacos ENSVPAG00000002144 I 0.754
CPEB3 Myotis lucifugus ENSMLUG00000009474 I 0.754
SNAPOd2T00005918001 Oikopleura dioica SNAPOd2T00005918001 I 0.743
cpeb4 Xenopus tropicalis ENSXETG00000012731 I 0.736
CPEB3 Otolemur garnettii ENSOGAG00000002002 I 0.732
CPEB4 Tetraodon nigroviridis ENSTNIG00000018221 I 0.732
CPEB3 Tarsius syrichta ENSTSYG00000003928 I 0.717
AAEL012065 Aedes aegypti AAEL012065 I 0.709