GA28809-RA (Drosophila pseudoobscura)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 FBgn0250168 T44416_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
Rbp9
M124_0.6 		Drosophila melanogaster UUDDGUU RNAcompete
Ray et al.(2013)
RNCMPT00132 		0.991
ELAVL4
M314_0.6 		Homo sapiens Sequence logo not available KUUUGUUUKKUUU RIP-chip
Cook et al.(2011)
619_19846595.1 		0.731
ELAVL4
M313_0.6 		Homo sapiens Sequence logo not available CYCUCCYUCYCYC RIP-chip
Cook et al.(2011)
619_19846595 		0.731
ELAVL4
M315_0.6 		Homo sapiens Sequence logo not available UUUUUUUUUWAAA RIP-chip
Cook et al.(2011)
619_19846595.2 		0.731
ELAVL2
M330_0.6 		Homo sapiens RWUUUAUUUWR SELEX
Cook et al.(2011)
784_7972035 		0.722
ELAVL2
M329_0.6 		Homo sapiens RWUUUAUUUWR SELEX
Cook et al.(2011)
783_7972035 		0.722
ELAVL2
M328_0.6 		Homo sapiens MUYCUUUWUWUUY SELEX
Cook et al.(2011)
782_8497264 		0.722
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
FBpp0287404 RRM 121 191
FBpp0287404 RRM 207 280
FBpp0287404 RRM 372 442

Links

Other RRM family RBPs
Other Drosophila pseudoobscura RBPs

132 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Ame_R004815 Ailuropoda melanoleuca Ame_R004815 I 0.000
Ame_R003954 Ailuropoda melanoleuca Ame_R003954 I 0.000
Ame_R004097 Ailuropoda melanoleuca Ame_R004097 I 0.000
CPEB3 Anolis carolinensis ENSACAG00000006335 I 0.000
ENSACAG00000012015 Anolis carolinensis ENSACAG00000012015 I 0.000
CPEB4 Anolis carolinensis ENSACAG00000015039 I 0.000
CPEB2 Bos taurus ENSBTAG00000019847 I 0.000
CPEB3 Bos taurus ENSBTAG00000015450 I 0.000
A7Z087_BOVIN Bos taurus ENSBTAG00000009995 I 0.000
gw.572.2.1 Branchiostoma floridae gw.572.2.1 I 0.000
LOC100402805 Callithrix jacchus ENSCJAG00000012227 I 0.000
LOC100392612 Callithrix jacchus ENSCJAG00000008495 I 0.000
CPEB4 Callithrix jacchus ENSCJAG00000019166 I 0.000
CPEB3 Canis familiaris ENSCAFG00000007423 I 0.000
CPEB4 Canis familiaris ENSCAFG00000016761 I 0.000
CPEB2 Canis familiaris ENSCAFG00000015372 I 0.000
CPEB4 Cavia porcellus ENSCPOG00000015530 I 0.000
CPEB2 Cavia porcellus ENSCPOG00000001180 I 0.000
CPEB2 Choloepus hoffmanni ENSCHOG00000003058 I 0.000
CPEB3 Choloepus hoffmanni ENSCHOG00000000272 I 0.000
cpeb3 Danio rerio ENSDARG00000060103 I 0.000
CPEB4 Danio rerio ENSDARG00000060495 I 0.000
CPEB2 Dasypus novemcinctus ENSDNOG00000016610 N 0.000
Cpeb2 Dipodomys ordii ENSDORG00000015311 I 0.000
CPEB3 Echinops telfairi ENSETEG00000000111 I 0.000
CPEB3 Equus caballus ENSECAG00000000077 I 0.000
LOC100058918 Equus caballus ENSECAG00000016921 I 0.000
CPEB2 Equus caballus ENSECAG00000008722 I 0.000
CPEB4 Erinaceus europaeus ENSEEUG00000010887 I 0.000
CPEB2 Gallus gallus ENSGALG00000014516 I 0.000
CPEB3 Gallus gallus ENSGALG00000006912 I 0.000
CPEB4 Gallus gallus ENSGALG00000014074 I 0.000
CPEB4 Gasterosteus aculeatus ENSGACG00000020430 I 0.000
CPEB4 Gasterosteus aculeatus ENSGACG00000018422 I 0.000
CPEB3 Gasterosteus aculeatus ENSGACG00000002944 I 0.000
CPEB3 Gorilla gorilla ENSGGOG00000016441 I 0.000
CPEB4 Gorilla gorilla ENSGGOG00000010097 I 0.000
CPEB2 Gorilla gorilla ENSGGOG00000004449 I 0.000
CPEB4 Homo sapiens ENSG00000113742 D 0.000
CPEB3 Homo sapiens ENSG00000107864 I 0.000
CPEB2 Homo sapiens ENSG00000137449 D 0.000
e_gw1.21.3.1 Lottia gigantea e_gw1.21.3.1 I 0.000
CPEB3 Loxodonta africana ENSLAFG00000018716 I 0.000
CPEB2 Loxodonta africana ENSLAFG00000007142 I 0.000
CPEB4 Loxodonta africana ENSLAFG00000016030 I 0.000
CPEB4 Macaca mulatta ENSMMUG00000019926 I 0.000
CPEB3 Macaca mulatta ENSMMUG00000015050 I 0.000
CPEB2 Macaca mulatta ENSMMUG00000001384 I 0.000
CPEB3 Macropus eugenii ENSMEUG00000009948 I 0.000
CPEB2 Macropus eugenii ENSMEUG00000008074 I 0.000
CPEB3 Meleagris gallopavo ENSMGAG00000009148 I 0.000
CPEB2 Meleagris gallopavo ENSMGAG00000005200 I 0.000
CPEB4 Meleagris gallopavo ENSMGAG00000003660 I 0.000
CPEB3 Microcebus murinus ENSMICG00000017842 I 0.000
CPEB3 Monodelphis domestica ENSMODG00000006673 I 0.000
CPEB4 Monodelphis domestica ENSMODG00000006036 I 0.000
CPEB2 Monodelphis domestica ENSMODG00000001149 I 0.000
Cpeb4 Mus musculus ENSMUSG00000020300 I 0.000
Cpeb2 Mus musculus ENSMUSG00000039782 I 0.000
Cpeb3 Mus musculus ENSMUSG00000039652 I 0.000
CPEB4 Myotis lucifugus ENSMLUG00000014640 I 0.000
CPEB3 Myotis lucifugus ENSMLUG00000009474 I 0.000
nasonia_NCBI_hmm338954 Nasonia vitripennis nasonia_NCBI_hmm338954 I 0.000
CPEB4 Ochotona princeps ENSOPRG00000002868 I 0.000
CPEB3 Ornithorhynchus anatinus ENSOANG00000015723 I 0.000
CPEB4 Ornithorhynchus anatinus ENSOANG00000003990 I 0.000
CPEB2 Ornithorhynchus anatinus ENSOANG00000003552 I 0.000
CPEB3 Oryctolagus cuniculus ENSOCUG00000010454 I 0.000
CPEB4 Oryctolagus cuniculus ENSOCUG00000008971 I 0.000
CPEB2 Oryctolagus cuniculus ENSOCUG00000007950 I 0.000
CPEB4 Oryzias latipes ENSORLG00000007328 I 0.000
CPEB4 Oryzias latipes ENSORLG00000001711 I 0.000
CPEB3 Oryzias latipes ENSORLG00000000726 I 0.000
CPEB2 Otolemur garnettii ENSOGAG00000011237 I 0.000
CPEB4 Otolemur garnettii ENSOGAG00000004243 I 0.000
CPEB3 Otolemur garnettii ENSOGAG00000002002 I 0.000
CPEB3 Pan troglodytes ENSPTRG00000002753 I 0.000
XR_025355.1 Pan troglodytes ENSPTRG00000015924 I 0.000
CPEB4 Pan troglodytes ENSPTRG00000017545 I 0.000
ENSPPYG00000016058 Pongo pygmaeus ENSPPYG00000016058 I 0.000
ENSPPYG00000014613 Pongo pygmaeus ENSPPYG00000014613 I 0.000
ENSPPYG00000002481 Pongo pygmaeus ENSPPYG00000002481 I 0.000
CPEB3 Procavia capensis ENSPCAG00000012417 I 0.000
CPEB4 Procavia capensis ENSPCAG00000007021 I 0.000
CPEB4 Pteropus vampyrus ENSPVAG00000007863 I 0.000
Cpeb3 Rattus norvegicus ENSRNOG00000020689 I 0.000
Cpeb4 Rattus norvegicus ENSRNOG00000033169 I 0.000
Sjc_0029950 Schistosoma japonicum Sjc_0029950 I 0.000
CPEB4 Sorex araneus ENSSARG00000013389 I 0.000
CPEB3 Sorex araneus ENSSARG00000001994 I 0.000
CPEB4 Spermophilus tridecemlineatus ENSSTOG00000006077 I 0.000
CPEB3 Sus scrofa ENSSSCG00000010468 I 0.000
CPEB2 Sus scrofa ENSSSCG00000008736 I 0.000
CPEB4 Taeniopygia guttata ENSTGUG00000000329 I 0.000
CPEB3 Taeniopygia guttata ENSTGUG00000008988 I 0.000
CPEB2 Taeniopygia guttata ENSTGUG00000009822 I 0.000
CPEB4 Takifugu rubripes ENSTRUG00000010947 I 0.000
CPEB3 Takifugu rubripes ENSTRUG00000011309 I 0.000
CPEB4 Takifugu rubripes ENSTRUG00000010692 I 0.000
CPEB4 Tarsius syrichta ENSTSYG00000003136 I 0.000
CPEB4 Tetraodon nigroviridis ENSTNIG00000018221 I 0.000
CPEB4 Tetraodon nigroviridis ENSTNIG00000017077 I 0.000
CPEB3 Tetraodon nigroviridis ENSTNIG00000004021 I 0.000
CPEB3 Tupaia belangeri ENSTBEG00000013125 I 0.000
CPEB4 Tupaia belangeri ENSTBEG00000001429 I 0.000
CPEB2 Tursiops truncatus ENSTTRG00000003940 I 0.000
CPEB3 Vicugna pacos ENSVPAG00000002144 I 0.000
ADH10187 Xenopus laevis ADH10187 I 0.000
cpeb3 Xenopus tropicalis ENSXETG00000012190 I 0.000