156918 (Helobdella robusta)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 156918 T48526_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PABPN1
M148_0.6 		Homo sapiens ARAAGA RNAcompete
Ray et al.(2013)
RNCMPT00157 		0.786
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
156918 RRM 91 160

Links

Other RRM family RBPs
Other Helobdella robusta RBPs

65 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Ame_R004658 Ailuropoda melanoleuca Ame_R004658 I 0.000
Ame_R015561 Ailuropoda melanoleuca Ame_R015561 I 0.000
Ame_R007174 Ailuropoda melanoleuca Ame_R007174 I 0.000
Aqu1.215178 Amphimedon queenslandica Aqu1.215178 I 0.000
amel4_ncbi_hmm6985 Apis mellifera amel4_ncbi_hmm6985 I 0.000
MEX3B Bos taurus ENSBTAG00000016630 I 0.000
MEX3A Bos taurus ENSBTAG00000019158 I 0.000
estExt_fgenesh2_pg.C_2010087 Branchiostoma floridae estExt_fgenesh2_pg.C_2010087 I 0.000
CBN24563 Caenorhabditis brenneri CBN24563 I 0.000
CBN20397 Caenorhabditis brenneri CBN20397 I 0.000
CBG05100 Caenorhabditis briggsae CBG05100 I 0.000
mex-3 Caenorhabditis elegans F53G12.5 I 0.000
CJA18034 Caenorhabditis japonica CJA18034 I 0.000
CRE03823 Caenorhabditis remanei CRE03823 I 0.000
LOC100410023 Callithrix jacchus ENSCJAG00000001902 I 0.000
LOC100410413 Callithrix jacchus ENSCJAG00000007711 I 0.000
MEX3B Callithrix jacchus ENSCJAG00000008043 I 0.000
MEX3C Canis familiaris ENSCAFG00000000162 I 0.000
ENSCPOG00000008241 Cavia porcellus ENSCPOG00000008241 I 0.000
MEX3C Cavia porcellus ENSCPOG00000009646 I 0.000
MEX3A Cavia porcellus ENSCPOG00000020219 I 0.000
MEX3C Choloepus hoffmanni ENSCHOG00000004915 I 0.000
ENSCING00000002603 Ciona intestinalis ENSCING00000002603 I 0.000
MEX3A Danio rerio ENSDARG00000076638 I 0.000
MEX3B Danio rerio ENSDARG00000058369 I 0.000
e_gw1.15.409.1 Daphnia pulex e_gw1.15.409.1 I 0.000
MEX3B Dasypus novemcinctus ENSDNOG00000012736 I 0.000
MEX3C Dasypus novemcinctus ENSDNOG00000006544 I 0.000
Mex3a Dipodomys ordii ENSDORG00000002921 I 0.000
GF20555 Drosophila ananassae FBgn0097561 I 0.000
GG16398 Drosophila erecta FBgn0108630 I 0.000
GH23938 Drosophila grimshawi FBgn0131395 I 0.000
CG11360 Drosophila melanogaster FBgn0039920 D 0.000
GL18139 Drosophila persimilis FBgn0155742 I 0.000
GA10947-RA Drosophila pseudoobscura FBgn0071003 I 0.000
GM26809 Drosophila sechellia FBgn0181661 I 0.000
GD24410 Drosophila simulans FBgn0195748 I 0.000
GJ18673 Drosophila virilis FBgn0205827 I 0.000
GK13594 Drosophila willistoni FBgn0215602 I 0.000
GE14558 Drosophila yakuba FBgn0232157 I 0.000
MEX3B Equus caballus ENSECAG00000013497 I 0.000
MEX3C Equus caballus ENSECAG00000021727 I 0.000
MEX3D Gasterosteus aculeatus ENSGACG00000015299 I 0.000
MEX3C Gasterosteus aculeatus ENSGACG00000007490 I 0.000
MEX3B Gasterosteus aculeatus ENSGACG00000012530 I 0.000
MEX3A Gorilla gorilla ENSGGOG00000004513 I 0.000
MEX3C Gorilla gorilla ENSGGOG00000014875 I 0.000
MEX3B Gorilla gorilla ENSGGOG00000000597 I 0.000
MEX3B Homo sapiens ENSG00000183496 I 0.000
MEX3C Homo sapiens ENSG00000176624 I 0.000
XP_002168292.1 Hydra magnipapillata XP_002168292.1 I 0.000
estExt_Genewise1.C_sca_540218 Lottia gigantea estExt_Genewise1.C_sca_540218 I 0.000
MEX3C Loxodonta africana ENSLAFG00000027818 I 0.000
MEX3B Loxodonta africana ENSLAFG00000006027 I 0.000
MEX3A Macaca mulatta ENSMMUG00000022307 I 0.000
MEX3B Macaca mulatta ENSMMUG00000018639 I 0.000
MEX3C Macaca mulatta ENSMMUG00000023652 I 0.000
MEX3B Macropus eugenii ENSMEUG00000002402 I 0.000
MEX3D Macropus eugenii ENSMEUG00000016404 I 0.000
MEX3D Monodelphis domestica ENSMODG00000004116 I 0.000
MEX3C Monodelphis domestica ENSMODG00000011001 I 0.000
MEX3A Monodelphis domestica ENSMODG00000016954 I 0.000
MEX3B Monodelphis domestica ENSMODG00000019387 I 0.000
Mex3c Mus musculus ENSMUSG00000037253 I 0.000
nasonia_NCBI_hmm456104 Nasonia vitripennis nasonia_NCBI_hmm456104 I 0.000
gw.320.9.1 Nematostella vectensis gw.320.9.1 I 0.000
MEX3B Ochotona princeps ENSOPRG00000009604 I 0.000
MEX3A Ochotona princeps ENSOPRG00000002937 I 0.000
ENSOCUG00000012549 Oryctolagus cuniculus ENSOCUG00000012549 I 0.000
MEX3A Oryctolagus cuniculus ENSOCUG00000005640 I 0.000
MEX3C Oryzias latipes ENSORLG00000004985 I 0.000
MEX3B Pan troglodytes ENSPTRG00000007373 I 0.000
MEX3C Pan troglodytes ENSPTRG00000010029 I 0.000
ENSPPYG00000006723 Pongo pygmaeus ENSPPYG00000006723 I 0.000
ENSPPYG00000000729 Pongo pygmaeus ENSPPYG00000000729 I 0.000
MEX3C Procavia capensis ENSPCAG00000009258 I 0.000
MEX3A Pteropus vampyrus ENSPVAG00000010333 I 0.000
MEX3B Pteropus vampyrus ENSPVAG00000000093 I 0.000
MEX3C Pteropus vampyrus ENSPVAG00000015135 I 0.000
Mex3c Rattus norvegicus ENSRNOG00000015777 I 0.000
XP_001175528.1 Strongylocentrotus purpuratus XP_001175528.1 I 0.000
XP_786425.2 Strongylocentrotus purpuratus XP_786425.2 I 0.000
MEX3D Takifugu rubripes ENSTRUG00000007986 I 0.000
MEX3C Takifugu rubripes ENSTRUG00000011888 I 0.000
MEX3B Takifugu rubripes ENSTRUG00000000367 I 0.000
MEX3D Tetraodon nigroviridis ENSTNIG00000015325 I 0.000
MEX3B Tetraodon nigroviridis ENSTNIG00000003398 I 0.000
MEX3A Tursiops truncatus ENSTTRG00000013346 I 0.000
MEX3C Tursiops truncatus ENSTTRG00000004570 I 0.000
A1L3F4 Xenopus laevis A1L3F4 I 0.000
AAI28670 Xenopus laevis AAI28670 I 0.000
AAI30070 Xenopus laevis AAI30070 I 0.000
AAI30196 Xenopus laevis AAI30196 I 0.000
BAH79688 Xenopus laevis BAH79688 I 0.000
mex3c Xenopus tropicalis ENSXETG00000022367 I 0.000