CBN24563 (Caenorhabditis brenneri)
KH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00013 (KH_1) IPR018111 CBN24563 T18289_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
CG11360
M122_0.6 		Drosophila melanogaster GAGUDW RNAcompete
Ray et al.(2013)
RNCMPT00129 		0.826
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
CBN24563 KH 51 111
CBN24563 KH 138 197

Links

Other KH family RBPs
Other Caenorhabditis brenneri RBPs

129 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
CBN20397 Caenorhabditis brenneri CBN20397 I 1.000
CBG05100 Caenorhabditis briggsae CBG05100 I 0.967
mex-3 Caenorhabditis elegans F53G12.5 I 0.959
CJA18034 Caenorhabditis japonica CJA18034 I 0.959
CRE03823 Caenorhabditis remanei CRE03823 I 0.959
MEX3C Monodelphis domestica ENSMODG00000011001 I 0.844
Mex3c Mus musculus ENSMUSG00000037253 I 0.844
MEX3C Dasypus novemcinctus ENSDNOG00000006544 I 0.844
MEX3C Loxodonta africana ENSLAFG00000027818 I 0.844
MEX3C Macaca mulatta ENSMMUG00000023652 I 0.844
MEX3C Gorilla gorilla ENSGGOG00000014875 I 0.844
MEX3C Homo sapiens ENSG00000176624 I 0.844
Mex3c Rattus norvegicus ENSRNOG00000015777 I 0.844
Ame_R004658 Ailuropoda melanoleuca Ame_R004658 I 0.844
MEX3C Equus caballus ENSECAG00000021727 I 0.844
MEX3C Tursiops truncatus ENSTTRG00000004570 I 0.844
LOC100410023 Callithrix jacchus ENSCJAG00000001902 I 0.844
MEX3C Pan troglodytes ENSPTRG00000010029 I 0.844
MEX3C Choloepus hoffmanni ENSCHOG00000004915 I 0.844
ENSOCUG00000012549 Oryctolagus cuniculus ENSOCUG00000012549 I 0.844
MEX3C Pteropus vampyrus ENSPVAG00000015135 I 0.844
MEX3C Cavia porcellus ENSCPOG00000009646 I 0.844
MEX3C Procavia capensis ENSPCAG00000009258 I 0.836
estExt_fgenesh2_pg.C_2010087 Branchiostoma floridae estExt_fgenesh2_pg.C_2010087 I 0.828
MEX3C Oryzias latipes ENSORLG00000004985 I 0.828
MEX3C Gasterosteus aculeatus ENSGACG00000007490 I 0.828
MEX3C Canis familiaris ENSCAFG00000000162 I 0.828
AAI28670 Xenopus laevis AAI28670 I 0.828
MEX3C Takifugu rubripes ENSTRUG00000011888 I 0.828
mex3c Xenopus tropicalis ENSXETG00000022367 I 0.828
ENSCPOG00000008241 Cavia porcellus ENSCPOG00000008241 I 0.828
GD24410 Drosophila simulans FBgn0195748 I 0.826
CG11360 Drosophila melanogaster FBgn0039920 D 0.826
GM26809 Drosophila sechellia FBgn0181661 I 0.826
GL18139 Drosophila persimilis FBgn0155742 I 0.826
GG16398 Drosophila erecta FBgn0108630 I 0.826
GA10947-RA Drosophila pseudoobscura FBgn0071003 I 0.826
GE14558 Drosophila yakuba FBgn0232157 I 0.826
XP_001175528.1 Strongylocentrotus purpuratus XP_001175528.1 I 0.820
MEX3B Monodelphis domestica ENSMODG00000019387 I 0.820
MEX3B Loxodonta africana ENSLAFG00000006027 I 0.820
Ame_R007174 Ailuropoda melanoleuca Ame_R007174 I 0.820
XP_786425.2 Strongylocentrotus purpuratus XP_786425.2 I 0.820
MEX3B Danio rerio ENSDARG00000058369 I 0.820
MEX3B Pteropus vampyrus ENSPVAG00000000093 I 0.820
AAI30070 Xenopus laevis AAI30070 I 0.820
MEX3B Callithrix jacchus ENSCJAG00000008043 I 0.820
A1L3F4 Xenopus laevis A1L3F4 I 0.820
MEX3B Equus caballus ENSECAG00000013497 I 0.820
MEX3B Ochotona princeps ENSOPRG00000009604 I 0.820
MEX3B Bos taurus ENSBTAG00000016630 I 0.820
MEX3B Gorilla gorilla ENSGGOG00000000597 I 0.820
nasonia_NCBI_hmm456104 Nasonia vitripennis nasonia_NCBI_hmm456104 I 0.820
ENSPPYG00000006723 Pongo pygmaeus ENSPPYG00000006723 I 0.820
MEX3B Pan troglodytes ENSPTRG00000007373 I 0.820
amel4_ncbi_hmm6985 Apis mellifera amel4_ncbi_hmm6985 I 0.820
estExt_Genewise1.C_sca_540218 Lottia gigantea estExt_Genewise1.C_sca_540218 I 0.820
MEX3B Macaca mulatta ENSMMUG00000018639 I 0.820
MEX3B Homo sapiens ENSG00000183496 I 0.820
BAH79688 Xenopus laevis BAH79688 I 0.820
Ame_R015561 Ailuropoda melanoleuca Ame_R015561 I 0.818
GJ18673 Drosophila virilis FBgn0205827 I 0.818
GK13594 Drosophila willistoni FBgn0215602 I 0.818
GH23938 Drosophila grimshawi FBgn0131395 I 0.818
GF20555 Drosophila ananassae FBgn0097561 I 0.818
gw.320.9.1 Nematostella vectensis gw.320.9.1 I 0.818
ENSPPYG00000000729 Pongo pygmaeus ENSPPYG00000000729 I 0.818
Mex3a Dipodomys ordii ENSDORG00000002921 I 0.818
MEX3A Macaca mulatta ENSMMUG00000022307 I 0.818
MEX3A Cavia porcellus ENSCPOG00000020219 I 0.818
LOC100410413 Callithrix jacchus ENSCJAG00000007711 I 0.818
MEX3A Bos taurus ENSBTAG00000019158 I 0.818
MEX3A Monodelphis domestica ENSMODG00000016954 I 0.818
MEX3A Gorilla gorilla ENSGGOG00000004513 I 0.818
MEX3A Ochotona princeps ENSOPRG00000002937 I 0.818
MEX3A Oryctolagus cuniculus ENSOCUG00000005640 I 0.818
MEX3B Macropus eugenii ENSMEUG00000002402 I 0.811
MEX3B Tetraodon nigroviridis ENSTNIG00000003398 I 0.811
MEX3B Takifugu rubripes ENSTRUG00000000367 I 0.811
AAI30196 Xenopus laevis AAI30196 I 0.810
ENSCING00000002603 Ciona intestinalis ENSCING00000002603 I 0.803
e_gw1.15.409.1 Daphnia pulex e_gw1.15.409.1 I 0.803
MEX3D Macropus eugenii ENSMEUG00000016404 I 0.803
MEX3D Monodelphis domestica ENSMODG00000004116 I 0.803
XP_002168292.1 Hydra magnipapillata XP_002168292.1 I 0.802
MEX3A Tursiops truncatus ENSTTRG00000013346 I 0.802
MEX3D Gasterosteus aculeatus ENSGACG00000015299 I 0.795
MEX3B Gasterosteus aculeatus ENSGACG00000012530 I 0.795
AAI42552 Xenopus laevis AAI42552 I 0.795
MEX3D Tetraodon nigroviridis ENSTNIG00000015325 I 0.795
MEX3D Takifugu rubripes ENSTRUG00000007986 I 0.795
AAI33220 Xenopus laevis AAI33220 I 0.787
MEX3D Taeniopygia guttata ENSTGUG00000000201 I 0.787
AAI30114 Xenopus laevis AAI30114 I 0.787
MEX3D Pan troglodytes ENSPTRG00000010208 I 0.779
Mex3d Rattus norvegicus ENSRNOG00000030830 I 0.779
MEX3B Cavia porcellus ENSCPOG00000023663 I 0.779
MEX3D Homo sapiens ENSG00000181588 I 0.779
MEX3D Gorilla gorilla ENSGGOG00000001083 I 0.779
MEX3D Tursiops truncatus ENSTTRG00000008132 I 0.779
ENSPPYG00000009324 Pongo pygmaeus ENSPPYG00000009324 I 0.779
Mex3d Mus musculus ENSMUSG00000048696 I 0.779
MEX3B Dasypus novemcinctus ENSDNOG00000012736 I 0.779
MEX3A Pteropus vampyrus ENSPVAG00000010333 I 0.777
MEX3A Danio rerio ENSDARG00000076638 I 0.777
MEX3D Ornithorhynchus anatinus ENSOANG00000011764 I 0.770
Aqu1.215178 Amphimedon queenslandica Aqu1.215178 I 0.769
MEX3A Microcebus murinus ENSMICG00000002233 I 0.760
CPIJ010634 Culex quinquefasciatus CPIJ010634 I 0.752
Ppa-mex-3 Pristionchus pacificus PPA08528 N 0.752
CpipJ_CPIJ010634 Culex pipiens CpipJ_CPIJ010634 I 0.752
AAEL012708 Aedes aegypti AAEL012708 I 0.752
AGAP013259 Anopheles gambiae AGAP013259 I 0.752
SNAPOd2T00016811001 Oikopleura dioica SNAPOd2T00016811001 I 0.744
ENSOCUG00000014295 Oryctolagus cuniculus ENSOCUG00000014295 I 0.736
BGIBMGA012436 Bombyx mori BGIBMGA012436 I 0.727
MEX3C Myotis lucifugus ENSMLUG00000012585 I 0.719
MEX3C Vicugna pacos ENSVPAG00000003137 I 0.719
MEX3C Tupaia belangeri ENSTBEG00000014438 I 0.719
Mex3c Dipodomys ordii ENSDORG00000007962 I 0.719
MEX3C Sorex araneus ENSSARG00000006940 I 0.719
MEX3C Microcebus murinus ENSMICG00000005815 I 0.719
MEX3C Erinaceus europaeus ENSEEUG00000010864 I 0.719
MEX3C Macropus eugenii ENSMEUG00000015929 I 0.719
MEX3C Anolis carolinensis ENSACAG00000010265 I 0.713
MEX3C Ornithorhynchus anatinus ENSOANG00000008116 I 0.713
Q2YDI4_BOVIN Bos taurus ENSBTAG00000014886 I 0.713
MEX3C Echinops telfairi ENSETEG00000003647 I 0.711
MEX3D Meleagris gallopavo ENSMGAG00000002325 I 0.705