CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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Aqu1.215178
(
Amphimedon queenslandica
)
KH
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00013 (KH_1)
IPR018111
Aqu1.215178
T20626_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
CG11360
M122_0.6
Drosophila melanogaster
GAGUDW
RNAcompete
Ray et al.(2013)
RNCMPT00129
0.793
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
Aqu1.215178
KH
501
561
THCVAVPSSEHVAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPVFVITGRPEDVSSAKREV
Aqu1.215178
KH
612
670
VYVKVPYRVVGLVVGPKGATIKRIQQITNTHIVTPSRDKEPCFEVSGKPEDVERAKKEI
Links
Other
KH
family RBPs
Other
Amphimedon queenslandica
RBPs
110 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
MEX3C
Procavia capensis
ENSPCAG00000009258
I
0.820
ENSCING00000002603
Ciona intestinalis
ENSCING00000002603
I
0.820
gw.320.9.1
Nematostella vectensis
gw.320.9.1
I
0.818
Mex3c
Mus musculus
ENSMUSG00000037253
I
0.811
ENSOCUG00000012549
Oryctolagus cuniculus
ENSOCUG00000012549
I
0.811
MEX3C
Gasterosteus aculeatus
ENSGACG00000007490
I
0.811
MEX3C
Oryzias latipes
ENSORLG00000004985
I
0.811
MEX3C
Monodelphis domestica
ENSMODG00000011001
I
0.811
MEX3C
Cavia porcellus
ENSCPOG00000009646
I
0.811
LOC100410023
Callithrix jacchus
ENSCJAG00000001902
I
0.811
ENSCPOG00000008241
Cavia porcellus
ENSCPOG00000008241
I
0.811
MEX3C
Choloepus hoffmanni
ENSCHOG00000004915
I
0.811
MEX3C
Loxodonta africana
ENSLAFG00000027818
I
0.811
MEX3C
Homo sapiens
ENSG00000176624
I
0.811
MEX3C
Macaca mulatta
ENSMMUG00000023652
I
0.811
MEX3C
Pan troglodytes
ENSPTRG00000010029
I
0.811
estExt_Genewise1.C_sca_540218
Lottia gigantea
estExt_Genewise1.C_sca_540218
I
0.811
MEX3C
Gorilla gorilla
ENSGGOG00000014875
I
0.811
MEX3C
Equus caballus
ENSECAG00000021727
I
0.811
Ame_R004658
Ailuropoda melanoleuca
Ame_R004658
I
0.811
MEX3C
Takifugu rubripes
ENSTRUG00000011888
I
0.811
MEX3C
Tursiops truncatus
ENSTTRG00000004570
I
0.811
estExt_fgenesh2_pg.C_2010087
Branchiostoma floridae
estExt_fgenesh2_pg.C_2010087
I
0.811
Mex3c
Rattus norvegicus
ENSRNOG00000015777
I
0.811
MEX3C
Dasypus novemcinctus
ENSDNOG00000006544
I
0.811
MEX3C
Pteropus vampyrus
ENSPVAG00000015135
I
0.811
GK13594
Drosophila willistoni
FBgn0215602
I
0.810
XP_002168292.1
Hydra magnipapillata
XP_002168292.1
I
0.810
GH23938
Drosophila grimshawi
FBgn0131395
I
0.810
GJ18673
Drosophila virilis
FBgn0205827
I
0.810
MEX3B
Gorilla gorilla
ENSGGOG00000000597
I
0.803
MEX3B
Homo sapiens
ENSG00000183496
I
0.803
MEX3B
Ochotona princeps
ENSOPRG00000009604
I
0.803
MEX3B
Pan troglodytes
ENSPTRG00000007373
I
0.803
MEX3B
Pteropus vampyrus
ENSPVAG00000000093
I
0.803
mex3c
Xenopus tropicalis
ENSXETG00000022367
I
0.803
ENSPPYG00000006723
Pongo pygmaeus
ENSPPYG00000006723
I
0.803
MEX3B
Equus caballus
ENSECAG00000013497
I
0.803
MEX3B
Macaca mulatta
ENSMMUG00000018639
I
0.803
MEX3B
Monodelphis domestica
ENSMODG00000019387
I
0.803
e_gw1.15.409.1
Daphnia pulex
e_gw1.15.409.1
I
0.803
MEX3B
Loxodonta africana
ENSLAFG00000006027
I
0.803
BAH79688
Xenopus laevis
BAH79688
I
0.803
MEX3B
Bos taurus
ENSBTAG00000016630
I
0.803
AAI30070
Xenopus laevis
AAI30070
I
0.803
AAI28670
Xenopus laevis
AAI28670
I
0.803
Ame_R007174
Ailuropoda melanoleuca
Ame_R007174
I
0.803
A1L3F4
Xenopus laevis
A1L3F4
I
0.803
MEX3B
Callithrix jacchus
ENSCJAG00000008043
I
0.803
amel4_ncbi_hmm6985
Apis mellifera
amel4_ncbi_hmm6985
I
0.803
MEX3B
Danio rerio
ENSDARG00000058369
I
0.803
XP_001175528.1
Strongylocentrotus purpuratus
XP_001175528.1
I
0.795
MEX3B
Tetraodon nigroviridis
ENSTNIG00000003398
I
0.795
MEX3B
Takifugu rubripes
ENSTRUG00000000367
I
0.795
XP_786425.2
Strongylocentrotus purpuratus
XP_786425.2
I
0.795
MEX3B
Macropus eugenii
ENSMEUG00000002402
I
0.795
nasonia_NCBI_hmm456104
Nasonia vitripennis
nasonia_NCBI_hmm456104
I
0.795
GL18139
Drosophila persimilis
FBgn0155742
I
0.793
GD24410
Drosophila simulans
FBgn0195748
I
0.793
GM26809
Drosophila sechellia
FBgn0181661
I
0.793
GA10947-RA
Drosophila pseudoobscura
FBgn0071003
I
0.793
CG11360
Drosophila melanogaster
FBgn0039920
D
0.793
GG16398
Drosophila erecta
FBgn0108630
I
0.793
GE14558
Drosophila yakuba
FBgn0232157
I
0.793
MEX3B
Gasterosteus aculeatus
ENSGACG00000012530
I
0.787
MEX3C
Canis familiaris
ENSCAFG00000000162
I
0.787
AAI30196
Xenopus laevis
AAI30196
I
0.785
GF20555
Drosophila ananassae
FBgn0097561
I
0.785
MEX3D
Macropus eugenii
ENSMEUG00000016404
I
0.779
MEX3D
Monodelphis domestica
ENSMODG00000004116
I
0.779
MEX3D
Taeniopygia guttata
ENSTGUG00000000201
I
0.779
LOC100410413
Callithrix jacchus
ENSCJAG00000007711
I
0.777
MEX3A
Cavia porcellus
ENSCPOG00000020219
I
0.777
ENSPPYG00000000729
Pongo pygmaeus
ENSPPYG00000000729
I
0.777
MEX3A
Gorilla gorilla
ENSGGOG00000004513
I
0.777
MEX3A
Ochotona princeps
ENSOPRG00000002937
I
0.777
Mex3a
Dipodomys ordii
ENSDORG00000002921
I
0.777
Ame_R015561
Ailuropoda melanoleuca
Ame_R015561
I
0.777
MEX3A
Monodelphis domestica
ENSMODG00000016954
I
0.777
MEX3A
Oryctolagus cuniculus
ENSOCUG00000005640
I
0.777
MEX3A
Danio rerio
ENSDARG00000076638
I
0.777
MEX3A
Bos taurus
ENSBTAG00000019158
I
0.777
MEX3A
Macaca mulatta
ENSMMUG00000022307
I
0.777
MEX3D
Gorilla gorilla
ENSGGOG00000001083
I
0.770
MEX3D
Takifugu rubripes
ENSTRUG00000007986
I
0.770
MEX3D
Tetraodon nigroviridis
ENSTNIG00000015325
I
0.770
MEX3D
Homo sapiens
ENSG00000181588
I
0.770
MEX3D
Tursiops truncatus
ENSTTRG00000008132
I
0.770
MEX3B
Cavia porcellus
ENSCPOG00000023663
I
0.770
Mex3d
Mus musculus
ENSMUSG00000048696
I
0.770
MEX3B
Dasypus novemcinctus
ENSDNOG00000012736
I
0.770
MEX3D
Gasterosteus aculeatus
ENSGACG00000015299
I
0.770
ENSPPYG00000009324
Pongo pygmaeus
ENSPPYG00000009324
I
0.770
Mex3d
Rattus norvegicus
ENSRNOG00000030830
I
0.770
MEX3D
Pan troglodytes
ENSPTRG00000010208
I
0.770
mex-3
Caenorhabditis elegans
F53G12.5
I
0.769
CRE03823
Caenorhabditis remanei
CRE03823
I
0.769
CBN20397
Caenorhabditis brenneri
CBN20397
I
0.769
CBN24563
Caenorhabditis brenneri
CBN24563
I
0.769
AAI42552
Xenopus laevis
AAI42552
I
0.762
CJA18034
Caenorhabditis japonica
CJA18034
I
0.760
MEX3A
Tursiops truncatus
ENSTTRG00000013346
I
0.760
AAI33220
Xenopus laevis
AAI33220
I
0.754
AAI30114
Xenopus laevis
AAI30114
I
0.754
CBG05100
Caenorhabditis briggsae
CBG05100
I
0.752
MEX3D
Ornithorhynchus anatinus
ENSOANG00000011764
I
0.746
MEX3A
Pteropus vampyrus
ENSPVAG00000010333
I
0.736
MEX3A
Microcebus murinus
ENSMICG00000002233
I
0.719
SNAPOd2T00016811001
Oikopleura dioica
SNAPOd2T00016811001
I
0.702
ENSOCUG00000014295
Oryctolagus cuniculus
ENSOCUG00000014295
I
0.702