156918 (Helobdella robusta)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 156918 T48526_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PABPN1
M148_0.6 		Homo sapiens ARAAGA RNAcompete
Ray et al.(2013)
RNCMPT00157 		0.786
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
156918 RRM 91 160

Links

Other RRM family RBPs
Other Helobdella robusta RBPs

65 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
PABPN1 Ornithorhynchus anatinus ENSOANG00000009218 I 0.800
PABPN1 Monodelphis domestica ENSMODG00000004535 I 0.800
pabpn1 Danio rerio ENSDARG00000045373 I 0.789
Pabpn1 Mus musculus ENSMUSG00000022194 I 0.786
e_gw1.14.113.1 Trichoplax adhaerens e_gw1.14.113.1 I 0.786
ENSBTAG00000001853 Bos taurus ENSBTAG00000001853 I 0.786
PABPN1 Oryctolagus cuniculus ENSOCUG00000016174 I 0.786
PABPN1 Pteropus vampyrus ENSPVAG00000005270 I 0.786
ENSPPYG00000005663 Pongo pygmaeus ENSPPYG00000005663 I 0.786
PABPN1 Otolemur garnettii ENSOGAG00000008710 I 0.786
PABP2_BOVIN Bos taurus ENSBTAG00000006884 I 0.786
B2CL2_CANFA Canis familiaris ENSCAFG00000011482 I 0.786
PABPN1 Gorilla gorilla ENSGGOG00000022683 I 0.786
PABPN1 Loxodonta africana ENSLAFG00000031227 I 0.786
PABPN1 Macaca mulatta ENSMMUG00000014747 I 0.786
PABPN1 Homo sapiens ENSG00000100836 D 0.786
LOC100055599 Equus caballus ENSECAG00000011652 I 0.786
LOC100396934 Callithrix jacchus ENSCJAG00000007960 I 0.786
PABPN1 Cavia porcellus ENSCPOG00000025574 I 0.786
Pabpn1 Dipodomys ordii ENSDORG00000002873 I 0.786
Pabpn1 Rattus norvegicus ENSRNOG00000042195 I 0.786
PABPN1 Pan troglodytes ENSPTRG00000006168 I 0.786
PABPN1 Sus scrofa ENSSSCG00000002023 I 0.786
estExt_Genewise1Plus.C_2670068 Capitella teleta estExt_Genewise1Plus.C_2670068 I 0.786
Ame_R020627 Ailuropoda melanoleuca Ame_R020627 I 0.786
PABPN1 Takifugu rubripes ENSTRUG00000006554 I 0.775
PABPN1 Tetraodon nigroviridis ENSTNIG00000005369 I 0.775
PABPN1 Oryzias latipes ENSORLG00000006136 I 0.775
PABPN1 Gasterosteus aculeatus ENSGACG00000002167 I 0.775
estExt_fgenesh1_pm.C_1750006 Capitella teleta estExt_fgenesh1_pm.C_1750006 I 0.771
AAH45063 Xenopus laevis AAH45063 I 0.771
ENSEEUG00000012973 Erinaceus europaeus ENSEEUG00000012973 I 0.771
AAG36902 Xenopus laevis AAG36902 I 0.771
Q7ZXB8 Xenopus laevis Q7ZXB8 I 0.771
ENSOCUG00000008701 Oryctolagus cuniculus ENSOCUG00000008701 I 0.771
AAR26262 Xenopus laevis AAR26262 I 0.771
Q9DDY9 Xenopus laevis Q9DDY9 I 0.771
AAH73657 Xenopus laevis AAH73657 I 0.771
gw1.9.516.1 Lottia gigantea gw1.9.516.1 I 0.761
fgenesh2_pm.scaffold_317000002 Branchiostoma floridae fgenesh2_pm.scaffold_317000002 I 0.761
PABPN1 Anolis carolinensis ENSACAG00000006185 I 0.757
pabpn1 Xenopus tropicalis ENSXETG00000014597 I 0.757
PABPN1 Myotis lucifugus ENSMLUG00000012452 I 0.757
e_gw.341.11.1 Branchiostoma floridae e_gw.341.11.1 I 0.757
e_gw.21.136.1 Nematostella vectensis e_gw.21.136.1 I 0.746
LOAG_03634 Loa loa LOAG_03634 I 0.746
WUBG_04965 Wuchereria bancrofti WUBG_04965 I 0.746
Bm1_48895 Brugia malayi Bm1_48895 I 0.746
amel4_ncbi_hmm446 Apis mellifera amel4_ncbi_hmm446 I 0.743
CRE07990 Caenorhabditis remanei CRE07990 I 0.729
CBG03741 Caenorhabditis briggsae CBG03741 I 0.729
DGIL_AUG5s13013g8t1 Acyrtosiphon pisum DGIL_AUG5s13013g8t1 I 0.729
CBN00953 Caenorhabditis brenneri CBN00953 I 0.729
CBN10290 Caenorhabditis brenneri CBN10290 I 0.729
XP_002163300.1 Hydra magnipapillata XP_002163300.1 I 0.729
PHUM037550 Pediculus humanus PHUM037550 I 0.714
CpipJ_CPIJ004581 Culex pipiens CpipJ_CPIJ004581 I 0.714
AAEL015143 Aedes aegypti AAEL015143 I 0.714
AGAP005117 Anopheles gambiae AGAP005117 I 0.714
CJA15148 Caenorhabditis japonica CJA15148 I 0.714
CPIJ004581 Culex quinquefasciatus CPIJ004581 I 0.714
CBN16301 Caenorhabditis brenneri CBN16301 I 0.714
pabp-2 Caenorhabditis elegans C17E4.5 I 0.714
estExt_Genewise1.C_30355 Daphnia pulex estExt_Genewise1.C_30355 I 0.700
BGIBMGA001950 Bombyx mori BGIBMGA001950 I 0.700