estExt_Genewise1Plus.C_20198 (Mucor circinelloides)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 estExt_Genewise1Plus.C_20198 T51412_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
Smp_067420
M201_0.6 		Schistosoma mansoni DWWUUUU RNAcompete
Ray et al.(2013)
RNCMPT00232 		0.706
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
estExt_Genewise1Plus.C_20198 RRM 13 83
estExt_Genewise1Plus.C_20198 RRM 100 171

Links

Other RRM family RBPs
Other Mucor circinelloides RBPs

77 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AAEL013795 Aedes aegypti AAEL013795 I 0.734
estExt_fgenesh2_pm.C_20717 Agaricus bisporus estExt_fgenesh2_pm.C_20717 N 0.720
AGAP001538 Anopheles gambiae AGAP001538 I 0.734
amel4_ncbi_hmm1889 Apis mellifera amel4_ncbi_hmm1889 I 0.727
ARB_04284 Arthroderma benhamiae ARB_04284 N 0.713
e_gw1.00735.103.1 Aspergillus carbonarius e_gw1.00735.103.1 N 0.701
ACLA_095350 Aspergillus clavatus CADACLAG00009128 N 0.722
AFLA_054780 Aspergillus flavus CADAFLAG00006087 N 0.708
AFUA_6G05180 Aspergillus fumigatus CADAFUAG00000741 N 0.722
ANIA_06501 Aspergillus nidulans CADANIAG00007269 N 0.715
An15g00100 Aspergillus niger CADANGAG00011688 N 0.722
estExt_fgenesh1_pm.C_120017 Batrachochytrium dendrobatidis estExt_fgenesh1_pm.C_120017 N 0.713
BDBG_09421 Blastomyces dermatitidis BDBG_09421 N 0.734
BC1G_13457 Botrytis cinerea BC1G_13457 N 0.727
BRADI3G27920 Brachypodium distachyon BRADI3G27920 I 0.713
fgenesh2_pg.scaffold_36000101 Branchiostoma floridae fgenesh2_pg.scaffold_36000101 I 0.706
estExt_fgenesh2_pm.C_9540001 Branchiostoma floridae estExt_fgenesh2_pm.C_9540001 I 0.706
PK08238.1 Cannabis sativa PK08238.1 I 0.706
estExt_Genewise1.C_230076 Capitella teleta estExt_Genewise1.C_230076 I 0.706
FER_chlre3.3.376.1.5 Chlamydomonas reinhardtii FER_chlre3.3.376.1.5 I 0.727
gw1.3.260.1 Chlorella NC64A gw1.3.260.1 I 0.727
estExt_Genewise1.C_60440 Chlorella vulgaris estExt_Genewise1.C_60440 I 0.720
CIMG_02600 Coccidioides immitis CIMG_02600 N 0.720
CPSG_00446 Coccidioides posadasii CPSG_00446 N 0.720
estExt_Genemark1.C_60101 Coccomyxa C 169 estExt_Genemark1.C_60101 I 0.720
CC1G_10837 Coprinopsis cinerea CC1G_10837 N 0.720
CpipJ_CPIJ014149 Culex pipiens CpipJ_CPIJ014149 I 0.734
CPIJ014149 Culex quinquefasciatus CPIJ014149 I 0.734
GF20385 Drosophila ananassae FBgn0097392 I 0.727
GG19577 Drosophila erecta FBgn0111779 I 0.727
GH17589 Drosophila grimshawi FBgn0125059 I 0.734
Spx Drosophila melanogaster FBgn0015818 I 0.720
GI16317 Drosophila mojavensis FBgn0139065 I 0.734
GL21313 Drosophila persimilis FBgn0158906 I 0.734
GA17684-RA Drosophila pseudoobscura FBgn0077694 I 0.734
GM12470 Drosophila sechellia FBgn0167407 I 0.720
GJ15655 Drosophila virilis FBgn0202845 I 0.734
GK19717 Drosophila willistoni FBgn0221715 I 0.727
GE16738 Drosophila yakuba FBgn0234234 I 0.727
Glyma12g36950.1 Glycine max Glyma12g36950.1 I 0.706
e_gw1.2.1555.1 Heterobasidion annosum e_gw1.2.1555.1 N 0.720
HCAG_06893 Histoplasma capsulatum HCAG_06893 N 0.727
ISCW010601 Ixodes scapularis ISCW010601 I 0.706
estExt_GeneWisePlus_worm.C_60233 Laccaria bicolor estExt_GeneWisePlus_worm.C_60233 N 0.706
estExt_Genewise1.C_sca_2060028 Lottia gigantea estExt_Genewise1.C_sca_2060028 I 0.734
cassava31033.valid.m1 Manihot esculenta cassava31033.valid.m1 I 0.706
MCYG_05258 Microsporum canis MCYG_05258 N 0.713
MGYG_06302 Microsporum gypseum MGYG_06302 N 0.713
nasonia_NCBI_hmm192414 Nasonia vitripennis nasonia_NCBI_hmm192414 I 0.720
estExt_gwp.C_590193 Nematostella vectensis estExt_gwp.C_590193 I 0.706
NFIA_051760 Neosartorya fischeri CADNFIAG00005042 N 0.722
BGIOSIBCE032328 Oryza indica BGIOSIBCE032328 I 0.706
LOC_Os10g31900 Oryza sativa LOC_Os10g31900 I 0.706
gw1.05.00.253.1 Ostreococcus tauri gw1.05.00.253.1 I 0.713
PABG_07859 Paracoccidioides brasiliensis PABG_07859 N 0.720
Pc12g04780 Penicillium chrysogenum Pc12g04780 N 0.701
PMAA_011470 Penicillium marneffei PMAA_011470 N 0.720
e_gwh2.1.820.1 Phanerochaete chrysosporium e_gwh2.1.820.1 N 0.727
estExt_Genewise1Plus.C_330054 Phycomyces blakesleeanus estExt_Genewise1Plus.C_330054 I 0.867
genemark.276_g Pleurotus ostreatus genemark.276_g N 0.713
B9HEU6_POPTR Populus trichocarpa POPTR_0007s12570 I 0.706
estExt_Genewise1Plus.C_920074 Postia placenta estExt_Genewise1Plus.C_920074 I 0.727
RO3G_10200 Rhizopus oryzae RO3G_10200 I 0.881
RO3G_15452 Rhizopus oryzae RO3G_15452 I 0.867
30183.m001303 Ricinus communis 30183.m001303 I 0.706
PTSG_00878 Salpingoeca rosetta PTSG_00878 I 0.706
Smp_067420 Schistosoma mansoni Smp_067420 D 0.706
e_gw1.2.2306.1 Schizophyllum commune e_gw1.2.2306.1 I 0.720
SS1G_09077 Sclerotinia sclerotiorum SS1G_09077 N 0.727
fgenesh2_kg.11_#_983_#_7076_1_CFOT Serpula lacrymans fgenesh2_kg.11_#_983_#_7076_1_CFOT N 0.720
SB01G020190 Sorghum bicolor Sb01g020190 I 0.706
SPPG_04182 Spizellomyces punctatus SPPG_04182 I 0.762
TERG_06435 Trichophyton rubrum TERG_06435 N 0.713
TRV_00155 Trichophyton verrucosum TRV_00155 N 0.713
e_gw1.6.938.1 Trichoplax adhaerens e_gw1.6.938.1 I 0.706
UREG_03156 Uncinocarpus reesii UREG_03156 N 0.720
GSVIVG00018991001 Vitis vinifera GSVIVG00018991001 I 0.713