fgenesh2_pg.C_sca_10000115 (Lottia gigantea)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 fgenesh2_pg.C_sca_10000115 T52146_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
fgenesh2_pg.C_sca_10000115 RRM 38 108

Links

Other RRM family RBPs
Other Lottia gigantea RBPs

111 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
DGIL_AUG5s13597g2t1 Acyrtosiphon pisum DGIL_AUG5s13597g2t1 N 0.704
AAEL002461 Aedes aegypti AAEL002461 N 0.761
estExt_fgenesh2_kg.C_140042 Agaricus bisporus estExt_fgenesh2_kg.C_140042 N 0.718
Ame_R006638 Ailuropoda melanoleuca Ame_R006638 N 0.778
Aqu1.200557 Amphimedon queenslandica Aqu1.200557 N 0.775
Aqu1.228439 Amphimedon queenslandica Aqu1.228439 N 0.789
RBMX2 Anolis carolinensis ENSACAG00000008819 N 0.750
AGAP000977 Anopheles gambiae AGAP000977 N 0.845
ANIA_04665 Aspergillus nidulans CADANIAG00005768 N 0.704
An07g05140 Aspergillus niger CADANGAG00005786 N 0.718
ATEG_05773 Aspergillus terreus CADATEAG00002943 N 0.718
estExt_fgenesh1_pg.C_30395 Batrachochytrium dendrobatidis estExt_fgenesh1_pg.C_30395 N 0.775
LOC534630 Bos taurus ENSBTAG00000006252 N 0.775
LOC613705 Bos taurus ENSBTAG00000014771 N 0.718
estExt_fgenesh2_pg.C_1800064 Branchiostoma floridae estExt_fgenesh2_pg.C_1800064 N 0.789
Bm1_02690 Brugia malayi Bm1_02690 N 0.746
CBN24057 Caenorhabditis brenneri CBN24057 N 0.718
CBG02589 Caenorhabditis briggsae CBG02589 N 0.732
C30B5.4 Caenorhabditis elegans C30B5.4 N 0.718
CJA10629 Caenorhabditis japonica CJA10629 N 0.718
CRE26315 Caenorhabditis remanei CRE26315 N 0.746
LOC100388331 Callithrix jacchus ENSCJAG00000002436 N 0.778
RBMX2 Canis familiaris ENSCAFG00000018770 N 0.757
gw1.462.53.1 Capitella teleta gw1.462.53.1 N 0.789
RBMX2 Cavia porcellus ENSCPOG00000006640 N 0.792
ENSCSAVG00000001047 Ciona savignyi ENSCSAVG00000001047 N 0.732
CIMG_06780 Coccidioides immitis CIMG_06780 N 0.704
CPSG_07351 Coccidioides posadasii CPSG_07351 N 0.704
CC1G_01457 Coprinopsis cinerea CC1G_01457 N 0.746
CpipJ_CPIJ015641 Culex pipiens CpipJ_CPIJ015641 N 0.716
CPIJ015641 Culex quinquefasciatus CPIJ015641 N 0.716
rbmx2 Danio rerio ENSDARG00000044380 N 0.775
estExt_Genewise1Plus.C_110324 Daphnia pulex estExt_Genewise1Plus.C_110324 N 0.803
GF14433 Drosophila ananassae FBgn0091460 N 0.789
GG21207 Drosophila erecta FBgn0113387 N 0.761
GH13830 Drosophila grimshawi FBgn0121306 N 0.761
CG10466 Drosophila melanogaster FBgn0032822 N 0.761
GI11259 Drosophila mojavensis FBgn0134020 N 0.789
GI11260 Drosophila mojavensis FBgn0134021 N 0.789
GI20215 Drosophila mojavensis FBgn0142951 N 0.789
GL26176 Drosophila persimilis FBgn0163758 N 0.775
GA10331-RA Drosophila pseudoobscura FBgn0070389 N 0.775
GM17378 Drosophila sechellia FBgn0172288 N 0.761
GD24233 Drosophila simulans FBgn0195582 N 0.761
GJ13600 Drosophila virilis FBgn0200822 N 0.789
GK14925 Drosophila willistoni FBgn0216930 N 0.789
GE13281 Drosophila yakuba FBgn0230967 N 0.761
RBMX2 Echinops telfairi ENSETEG00000001763 N 0.792
LOC100058600 Equus caballus ENSECAG00000008257 N 0.778
RBMX2 Erinaceus europaeus ENSEEUG00000000839 N 0.750
RBMX2 Gallus gallus ENSGALG00000004025 N 0.806
RBMX2 Gasterosteus aculeatus ENSGACG00000001855 N 0.746
RBMX2 Gorilla gorilla ENSGGOG00000023687 N 0.778
ENSGGOG00000026106 Gorilla gorilla ENSGGOG00000026106 N 0.736
ENSGGOG00000016146 Gorilla gorilla ENSGGOG00000016146 N 0.764
145168 Helobdella robusta 145168 N 0.746
gw1.4.2036.1 Heterobasidion annosum gw1.4.2036.1 N 0.732
RBMX2 Homo sapiens ENSG00000134597 N 0.778
XP_002164481.1 Hydra magnipapillata XP_002164481.1 N 0.817
gwh1.4.608.1 Laccaria bicolor gwh1.4.608.1 N 0.732
ENSLAFG00000028277 Loxodonta africana ENSLAFG00000028277 N 0.761
RBMX2 Loxodonta africana ENSLAFG00000017625 N 0.757
RBMX2 Macaca mulatta ENSMMUG00000008389 N 0.778
XP_001110036.1 Macaca mulatta ENSMMUG00000020845 N 0.778
RBMX2 Macropus eugenii ENSMEUG00000010913 N 0.778
RBMX2 Meleagris gallopavo ENSMGAG00000001801 N 0.778
RBMX2 Microcebus murinus ENSMICG00000015139 N 0.778
ENSMODG00000019800 Monodelphis domestica ENSMODG00000019800 N 0.764
XM_001377711.1 Monodelphis domestica ENSMODG00000012002 N 0.764
estExt_fgenesh1_pg.C_410012 Monosiga brevicollis estExt_fgenesh1_pg.C_410012 N 0.718
gw1.1.2440.1 Mucor circinelloides gw1.1.2440.1 N 0.704
Rbmx2 Mus musculus ENSMUSG00000031107 N 0.792
ENSMLUG00000010298 Myotis lucifugus ENSMLUG00000010298 N 0.778
ENSMLUG00000017095 Myotis lucifugus ENSMLUG00000017095 N 0.789
nasonia_NCBI_hmm382923 Nasonia vitripennis nasonia_NCBI_hmm382923 N 0.831
gw.130.169.1 Nematostella vectensis gw.130.169.1 N 0.732
RBMX2 Ornithorhynchus anatinus ENSOANG00000001362 N 0.730
ENSOCUG00000020937 Oryctolagus cuniculus ENSOCUG00000020937 N 0.716
RBMX2 Oryctolagus cuniculus ENSOCUG00000011809 N 0.781
RBMX2 Oryzias latipes ENSORLG00000013183 N 0.746
ENSOGAG00000009060 Otolemur garnettii ENSOGAG00000009060 N 0.722
ENSOGAG00000006237 Otolemur garnettii ENSOGAG00000006237 N 0.778
XR_023755.1 Pan troglodytes ENSPTRG00000022269 N 0.736
PHUM617480 Pediculus humanus PHUM617480 N 0.775
Pc22g16450 Penicillium chrysogenum Pc22g16450 N 0.718
gwh2.2.841.1 Phanerochaete chrysosporium gwh2.2.841.1 N 0.704
gw1.4.1321.1 Pleurotus ostreatus gw1.4.1321.1 N 0.718
PredSwiss_CON1238.1 Pneumocystis carinii PredSwiss_CON1238.1 N 0.761
ENSPPYG00000020717 Pongo pygmaeus ENSPPYG00000020717 N 0.736
estExt_fgenesh3_pg.C_500008 Postia placenta estExt_fgenesh3_pg.C_500008 N 0.732
RBMX2 Procavia capensis ENSPCAG00000012903 N 0.736
RBMX2 Pteropus vampyrus ENSPVAG00000004425 N 0.778
Rbmx2 Rattus norvegicus ENSRNOG00000007371 N 0.792
Sjc_0109550 Schistosoma japonicum Sjc_0109550 N 0.757
Smp_170230 Schistosoma mansoni Smp_170230 N 0.757
estExt_Genewise1Plus.C_10678 Schizophyllum commune estExt_Genewise1Plus.C_10678 N 0.732
SS1G_03313 Sclerotinia sclerotiorum SS1G_03313 N 0.704
estExt_fgenesh2_kg.C_42587 Serpula lacrymans estExt_fgenesh2_kg.C_42587 N 0.718
RBMX2 Sorex araneus ENSSARG00000007350 N 0.789
RBMX2 Spermophilus tridecemlineatus ENSSTOG00000015391 N 0.806
XP_001180915.1 Strongylocentrotus purpuratus XP_001180915.1 N 0.775
XP_791635.2 Strongylocentrotus purpuratus XP_791635.2 N 0.775
RBMX2 Takifugu rubripes ENSTRUG00000001699 N 0.775
RBMX2 Tarsius syrichta ENSTSYG00000010611 N 0.746
RBMX2 Tetraodon nigroviridis ENSTNIG00000007672 N 0.789
gw1.1.3012.1 Tremella mesenterica gw1.1.3012.1 N 0.718
gw1.1.2244.1 Trichoplax adhaerens gw1.1.2244.1 N 0.732
RBMX2 Tursiops truncatus ENSTTRG00000016210 N 0.778
UREG_03685 Uncinocarpus reesii UREG_03685 N 0.704
WUBG_13107 Wuchereria bancrofti WUBG_13107 N 0.746
AAH56844 Xenopus laevis AAH56844 N 0.730