CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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AAH70969
(
Xenopus laevis
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
AAH70969
T59510_0.6
Xenbase (2010-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
HNRNPH2
M151_0.6
Homo sapiens
GGGAGGG
RNAcompete
Ray et al.(2013)
RNCMPT00160
0.876
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
AAH70969
RRM
12
83
VKVRGLPWSCSHDEIENFFSESKIANGLSGVHFIYTREGRPSGEAFVEFETEDDLQLAVKKDRATMAHRYVE
AAH70969
RRM
112
181
VRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIE
AAH70969
RRM
279
346
VHMRGLPYRATETDIYTFFSPLNPVRVHIEIGADGRVTGEADVEFASHEDAVAAMSKDKANMQHRYVE
Links
Other
RRM
family RBPs
Other
Xenopus laevis
RBPs
91 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
Aqu1.220260
Amphimedon queenslandica
Aqu1.220260
N
0.000
fgenesh2_pg.scaffold_81000029
Branchiostoma floridae
fgenesh2_pg.scaffold_81000029
N
0.000