ENSTNIG00000013914 (Tetraodon nigroviridis)
CCCH ZF,RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH)
PF00076 (RRM_1) 		IPR000571
IPR000504 		ENSTNIG00000013914 T00635_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
ENSTNIP00000016919 CCCH ZF 13 39
ENSTNIP00000016919 RRM 64 141
ENSTNIP00000016919 CCCH ZF 149 175

Links

Other CCCH ZF,RRM family RBPs
Other Tetraodon nigroviridis RBPs

87 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Q9YHU4_FUGRU Takifugu rubripes ENSTRUG00000010538 N 1.000
ENSGACG00000003454 Gasterosteus aculeatus ENSGACG00000003454 N 0.833
U2AF1 Homo sapiens ENSG00000160201 N 0.833
U2AF1 Echinops telfairi ENSETEG00000002200 N 0.833
U2AF1_BOVIN Bos taurus ENSBTAG00000011645 N 0.833
U2AF1 Cavia porcellus ENSCPOG00000004893 N 0.833
Q98TR0_CHICK Gallus gallus ENSGALG00000016198 N 0.833
U2AF1 Microcebus murinus ENSMICG00000013835 N 0.833
U2AF1 Pan troglodytes ENSPTRG00000013952 N 0.833
U2AF1 Taeniopygia guttata ENSTGUG00000005826 N 0.833
U2af1 Mus musculus ENSMUSG00000061613 N 0.833
U2AF1 Monodelphis domestica ENSMODG00000021029 N 0.833
U2AF1 Macaca mulatta ENSMMUG00000022769 N 0.833
U2AF1 Loxodonta africana ENSLAFG00000011460 N 0.833
U2AF1 Anolis carolinensis ENSACAG00000017836 N 0.833
U2AF1 Tarsius syrichta ENSTSYG00000006799 N 0.833
U2AF1 Oryzias latipes ENSORLG00000006182 N 0.826
u2af1 Danio rerio ENSDARG00000015325 N 0.826
U2AF1 Tetraodon nigroviridis ENSTNIG00000008311 N 0.826
e_gw.8.588.1 Branchiostoma floridae e_gw.8.588.1 N 0.818
AAI08559 Xenopus laevis AAI08559 N 0.818
e_gw.8.587.1 Branchiostoma floridae e_gw.8.587.1 N 0.818
U2AF1 Gasterosteus aculeatus ENSGACG00000014605 N 0.818
LOC100415206 Callithrix jacchus ENSCJAG00000015843 N 0.818
U2AF1 Vicugna pacos ENSVPAG00000002856 N 0.811
U2af1 Dipodomys ordii ENSDORG00000000211 N 0.811
U2AF1 Myotis lucifugus ENSMLUG00000014756 N 0.811
LOC100057570 Equus caballus ENSECAG00000015558 N 0.811
U2AF1 Meleagris gallopavo ENSMGAG00000014587 N 0.811
U2AF1 Ornithorhynchus anatinus ENSOANG00000006463 N 0.811
Ame_R019749 Ailuropoda melanoleuca Ame_R019749 N 0.811
U2AF1 Spermophilus tridecemlineatus ENSSTOG00000012766 N 0.811
U2AF1 Tupaia belangeri ENSTBEG00000000453 N 0.811
U2AF1 Pteropus vampyrus ENSPVAG00000016992 N 0.811
U2AF1 Procavia capensis ENSPCAG00000013413 N 0.811
U2AF1 Canis familiaris ENSCAFG00000010572 N 0.811
Sjc_0045900 Schistosoma japonicum Sjc_0045900 N 0.803
U2AF1 Takifugu rubripes ENSTRUG00000013815 N 0.795
Smp_093100 Schistosoma mansoni Smp_093100 N 0.795
XP_001191705.1 Strongylocentrotus purpuratus XP_001191705.1 N 0.795
DGIL_AUG5s4512g5t1 Acyrtosiphon pisum DGIL_AUG5s4512g5t1 N 0.795
ENSORLG00000008857 Oryzias latipes ENSORLG00000008857 N 0.795
ENSCING00000004086 Ciona intestinalis ENSCING00000004086 N 0.780
ENSCSAVG00000000329 Ciona savignyi ENSCSAVG00000000329 N 0.780
e_gw.121.26.1 Nematostella vectensis e_gw.121.26.1 N 0.780
e_gw1.49.82.1 Lottia gigantea e_gw1.49.82.1 N 0.773
estExt_Genewise1.C_3650003 Capitella teleta estExt_Genewise1.C_3650003 N 0.765
U2af1l4 Mus musculus ENSMUSG00000078765 N 0.758
U2AF1L4 Oryctolagus cuniculus ENSOCUG00000013434 N 0.758
e_gw1.35.104.1 Trichoplax adhaerens e_gw1.35.104.1 N 0.758
U2AF1L4 Sus scrofa ENSSSCG00000002896 N 0.758
U2af1l4 Rattus norvegicus ENSRNOG00000024497 N 0.758
U2AF1L4 Equus caballus ENSECAG00000017941 N 0.758
U2AF1L4 Loxodonta africana ENSLAFG00000012923 N 0.758
U2AF4_BOVIN Bos taurus ENSBTAG00000023610 N 0.758
Aqu1.219575 Amphimedon queenslandica Aqu1.219575 N 0.750
184981 Helobdella robusta 184981 N 0.750
U2AF1L4 Monodelphis domestica ENSMODG00000014003 N 0.750
ENSGGOG00000025487 Gorilla gorilla ENSGGOG00000025487 N 0.742
PHUM349680 Pediculus humanus PHUM349680 N 0.742
BGIBMGA010333 Bombyx mori BGIBMGA010333 N 0.742
U2AF1L4 Gorilla gorilla ENSGGOG00000016828 N 0.742
nasonia_NCBI_hmm622923 Nasonia vitripennis nasonia_NCBI_hmm622923 N 0.742
U2AF1L4 Pan troglodytes ENSPTRG00000010860 N 0.742
e_gw1.30.183.1 Daphnia pulex e_gw1.30.183.1 N 0.735
U2AF1L4 Homo sapiens ENSG00000161265 N 0.735
amel4_ncbi_hmm38272 Apis mellifera amel4_ncbi_hmm38272 N 0.735
GD22967 Drosophila simulans FBgn0194360 N 0.727
GE16227 Drosophila yakuba FBgn0233767 N 0.727
CPIJ003901 Culex quinquefasciatus CPIJ003901 N 0.727
GM16679 Drosophila sechellia FBgn0171592 N 0.727
CPIJ016711 Culex quinquefasciatus CPIJ016711 N 0.727
GL25824 Drosophila persimilis FBgn0163408 N 0.727
GK14823 Drosophila willistoni FBgn0216828 N 0.727
CpipJ_CPIJ003901 Culex pipiens CpipJ_CPIJ003901 N 0.727
GF24893 Drosophila ananassae FBgn0101885 N 0.727
GJ17240 Drosophila virilis FBgn0204416 N 0.727
GG24659 Drosophila erecta FBgn0116791 N 0.727
GH10217 Drosophila grimshawi FBgn0117698 N 0.727
CpipJ_CPIJ016711 Culex pipiens CpipJ_CPIJ016711 N 0.727
GA17536-RA Drosophila pseudoobscura FBgn0077547 N 0.727
XP_002156010.1 Hydra magnipapillata XP_002156010.1 N 0.727
AAEL006713 Aedes aegypti AAEL006713 N 0.727
GI15018 Drosophila mojavensis FBgn0137768 N 0.727
U2af38 Drosophila melanogaster FBgn0017457 N 0.727
AGAP002956 Anopheles gambiae AGAP002956 N 0.727
PTSG_08923 Salpingoeca rosetta PTSG_08923 N 0.705