GE16227 (Drosophila yakuba)
CCCH ZF,RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH)
PF00076 (RRM_1) 		IPR000571
IPR000504 		FBgn0233767 T00702_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
FBpp0261237 CCCH ZF 13 39
FBpp0261237 RRM 86 143
FBpp0261237 CCCH ZF 151 177

Links

Other CCCH ZF,RRM family RBPs
Other Drosophila yakuba RBPs

91 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
GJ17240 Drosophila virilis FBgn0204416 N 1.000
GF24893 Drosophila ananassae FBgn0101885 N 1.000
GK14823 Drosophila willistoni FBgn0216828 N 1.000
GG24659 Drosophila erecta FBgn0116791 N 1.000
GM16679 Drosophila sechellia FBgn0171592 N 1.000
GA17536-RA Drosophila pseudoobscura FBgn0077547 N 1.000
GD22967 Drosophila simulans FBgn0194360 N 1.000
GI15018 Drosophila mojavensis FBgn0137768 N 1.000
GL25824 Drosophila persimilis FBgn0163408 N 1.000
GH10217 Drosophila grimshawi FBgn0117698 N 1.000
U2af38 Drosophila melanogaster FBgn0017457 N 1.000
PHUM349680 Pediculus humanus PHUM349680 N 0.965
nasonia_NCBI_hmm622923 Nasonia vitripennis nasonia_NCBI_hmm622923 N 0.965
BGIBMGA010333 Bombyx mori BGIBMGA010333 N 0.965
CpipJ_CPIJ016711 Culex pipiens CpipJ_CPIJ016711 N 0.956
AAEL006713 Aedes aegypti AAEL006713 N 0.956
CPIJ016711 Culex quinquefasciatus CPIJ016711 N 0.956
AGAP002956 Anopheles gambiae AGAP002956 N 0.956
CpipJ_CPIJ003901 Culex pipiens CpipJ_CPIJ003901 N 0.956
amel4_ncbi_hmm38272 Apis mellifera amel4_ncbi_hmm38272 N 0.956
CPIJ003901 Culex quinquefasciatus CPIJ003901 N 0.956
e_gw1.30.183.1 Daphnia pulex e_gw1.30.183.1 N 0.938
e_gw.121.26.1 Nematostella vectensis e_gw.121.26.1 N 0.867
AAI08559 Xenopus laevis AAI08559 N 0.858
ENSCSAVG00000000329 Ciona savignyi ENSCSAVG00000000329 N 0.851
e_gw.8.588.1 Branchiostoma floridae e_gw.8.588.1 N 0.851
ENSCING00000004086 Ciona intestinalis ENSCING00000004086 N 0.851
e_gw.8.587.1 Branchiostoma floridae e_gw.8.587.1 N 0.851
estExt_Genewise1.C_3650003 Capitella teleta estExt_Genewise1.C_3650003 N 0.851
U2AF1 Cavia porcellus ENSCPOG00000004893 N 0.850
ENSGACG00000003454 Gasterosteus aculeatus ENSGACG00000003454 N 0.850
U2AF1 Homo sapiens ENSG00000160201 N 0.850
U2AF1 Loxodonta africana ENSLAFG00000011460 N 0.850
U2AF1 Pan troglodytes ENSPTRG00000013952 N 0.850
U2AF1 Microcebus murinus ENSMICG00000013835 N 0.850
U2AF1 Echinops telfairi ENSETEG00000002200 N 0.850
U2AF1 Macaca mulatta ENSMMUG00000022769 N 0.850
U2AF1 Taeniopygia guttata ENSTGUG00000005826 N 0.850
U2AF1 Tarsius syrichta ENSTSYG00000006799 N 0.850
U2AF1 Monodelphis domestica ENSMODG00000021029 N 0.850
U2af1 Mus musculus ENSMUSG00000061613 N 0.850
U2AF1 Oryzias latipes ENSORLG00000006182 N 0.850
Q98TR0_CHICK Gallus gallus ENSGALG00000016198 N 0.850
U2AF1_BOVIN Bos taurus ENSBTAG00000011645 N 0.850
U2AF1 Anolis carolinensis ENSACAG00000017836 N 0.850
U2AF1 Tetraodon nigroviridis ENSTNIG00000008311 N 0.850
e_gw1.49.82.1 Lottia gigantea e_gw1.49.82.1 N 0.845
u2af1 Danio rerio ENSDARG00000015325 N 0.841
U2AF1 Gasterosteus aculeatus ENSGACG00000014605 N 0.841
LOC100415206 Callithrix jacchus ENSCJAG00000015843 N 0.832
U2AF1 Takifugu rubripes ENSTRUG00000013815 N 0.832
U2AF1 Procavia capensis ENSPCAG00000013413 N 0.832
Aqu1.219575 Amphimedon queenslandica Aqu1.219575 N 0.825
U2AF1 Ornithorhynchus anatinus ENSOANG00000006463 N 0.823
U2AF1 Tupaia belangeri ENSTBEG00000000453 N 0.823
ENSORLG00000008857 Oryzias latipes ENSORLG00000008857 N 0.823
U2AF1 Pteropus vampyrus ENSPVAG00000016992 N 0.823
U2AF1 Vicugna pacos ENSVPAG00000002856 N 0.823
U2AF1 Spermophilus tridecemlineatus ENSSTOG00000012766 N 0.823
U2af1 Dipodomys ordii ENSDORG00000000211 N 0.823
U2AF1 Canis familiaris ENSCAFG00000010572 N 0.823
LOC100057570 Equus caballus ENSECAG00000015558 N 0.823
U2AF1 Myotis lucifugus ENSMLUG00000014756 N 0.823
U2AF1 Meleagris gallopavo ENSMGAG00000014587 N 0.823
Ame_R019749 Ailuropoda melanoleuca Ame_R019749 N 0.823
Smp_093100 Schistosoma mansoni Smp_093100 N 0.818
DGIL_AUG5s4512g5t1 Acyrtosiphon pisum DGIL_AUG5s4512g5t1 N 0.817
U2AF4_BOVIN Bos taurus ENSBTAG00000023610 N 0.807
U2af1l4 Mus musculus ENSMUSG00000078765 N 0.807
U2AF1L4 Sus scrofa ENSSSCG00000002896 N 0.807
U2AF1L4 Oryctolagus cuniculus ENSOCUG00000013434 N 0.807
U2AF1L4 Loxodonta africana ENSLAFG00000012923 N 0.807
U2AF1L4 Monodelphis domestica ENSMODG00000014003 N 0.807
U2AF1L4 Equus caballus ENSECAG00000017941 N 0.807
U2af1l4 Rattus norvegicus ENSRNOG00000024497 N 0.807
XP_002156010.1 Hydra magnipapillata XP_002156010.1 N 0.805
184981 Helobdella robusta 184981 N 0.798
e_gw1.35.104.1 Trichoplax adhaerens e_gw1.35.104.1 N 0.797
PTSG_08923 Salpingoeca rosetta PTSG_08923 N 0.796
XP_001191705.1 Strongylocentrotus purpuratus XP_001191705.1 N 0.795
U2AF1L4 Gorilla gorilla ENSGGOG00000016828 N 0.789
U2AF1L4 Homo sapiens ENSG00000161265 N 0.781
Sjc_0045900 Schistosoma japonicum Sjc_0045900 N 0.778
ISCW019664 Ixodes scapularis ISCW019664 N 0.767
ENSGGOG00000025487 Gorilla gorilla ENSGGOG00000025487 N 0.761
U2AF1L4 Pan troglodytes ENSPTRG00000010860 N 0.756
XP_002167624.1 Hydra magnipapillata XP_002167624.1 N 0.752
SPPG_02695 Spizellomyces punctatus SPPG_02695 N 0.739
ENSTNIG00000013914 Tetraodon nigroviridis ENSTNIG00000013914 N 0.727
Q9YHU4_FUGRU Takifugu rubripes ENSTRUG00000010538 N 0.727
CAOG_00458 Capsaspora owczarzaki CAOG_00458 N 0.704