Aqu1.219575 (Amphimedon queenslandica)
CCCH ZF,RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH)
PF00076 (RRM_1) 		IPR000571
IPR000504 		Aqu1.219575 T00825_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
Aqu1.219575 CCCH ZF 13 39
Aqu1.219575 RRM 81 140
Aqu1.219575 CCCH ZF 148 174

Links

Other CCCH ZF,RRM family RBPs
Other Amphimedon queenslandica RBPs

93 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
e_gw.8.587.1 Branchiostoma floridae e_gw.8.587.1 N 0.886
ENSCING00000004086 Ciona intestinalis ENSCING00000004086 N 0.886
e_gw.8.588.1 Branchiostoma floridae e_gw.8.588.1 N 0.886
AAI08559 Xenopus laevis AAI08559 N 0.877
estExt_Genewise1.C_3650003 Capitella teleta estExt_Genewise1.C_3650003 N 0.877
U2AF1 Procavia capensis ENSPCAG00000013413 N 0.877
U2AF1 Homo sapiens ENSG00000160201 N 0.868
ENSGACG00000003454 Gasterosteus aculeatus ENSGACG00000003454 N 0.868
ENSCSAVG00000000329 Ciona savignyi ENSCSAVG00000000329 N 0.868
U2AF1 Echinops telfairi ENSETEG00000002200 N 0.868
u2af1 Danio rerio ENSDARG00000015325 N 0.868
U2AF1_BOVIN Bos taurus ENSBTAG00000011645 N 0.868
U2AF1 Cavia porcellus ENSCPOG00000004893 N 0.868
U2AF1 Loxodonta africana ENSLAFG00000011460 N 0.868
U2AF1 Monodelphis domestica ENSMODG00000021029 N 0.868
U2AF1 Taeniopygia guttata ENSTGUG00000005826 N 0.868
U2AF1 Tetraodon nigroviridis ENSTNIG00000008311 N 0.868
U2AF1 Tarsius syrichta ENSTSYG00000006799 N 0.868
U2AF1 Pan troglodytes ENSPTRG00000013952 N 0.868
U2AF1 Oryzias latipes ENSORLG00000006182 N 0.868
U2AF1 Macaca mulatta ENSMMUG00000022769 N 0.868
U2AF1 Anolis carolinensis ENSACAG00000017836 N 0.868
U2af1 Mus musculus ENSMUSG00000061613 N 0.868
U2AF1 Microcebus murinus ENSMICG00000013835 N 0.868
Q98TR0_CHICK Gallus gallus ENSGALG00000016198 N 0.868
e_gw.121.26.1 Nematostella vectensis e_gw.121.26.1 N 0.860
U2AF1 Gasterosteus aculeatus ENSGACG00000014605 N 0.860
LOC100415206 Callithrix jacchus ENSCJAG00000015843 N 0.851
U2AF1 Takifugu rubripes ENSTRUG00000013815 N 0.851
PHUM349680 Pediculus humanus PHUM349680 N 0.851
BGIBMGA010333 Bombyx mori BGIBMGA010333 N 0.851
nasonia_NCBI_hmm622923 Nasonia vitripennis nasonia_NCBI_hmm622923 N 0.851
U2AF1 Myotis lucifugus ENSMLUG00000014756 N 0.842
U2AF1 Ornithorhynchus anatinus ENSOANG00000006463 N 0.842
e_gw1.30.183.1 Daphnia pulex e_gw1.30.183.1 N 0.842
Ame_R019749 Ailuropoda melanoleuca Ame_R019749 N 0.842
U2AF1 Vicugna pacos ENSVPAG00000002856 N 0.842
U2AF1 Pteropus vampyrus ENSPVAG00000016992 N 0.842
LOC100057570 Equus caballus ENSECAG00000015558 N 0.842
U2AF1 Spermophilus tridecemlineatus ENSSTOG00000012766 N 0.842
amel4_ncbi_hmm38272 Apis mellifera amel4_ncbi_hmm38272 N 0.842
U2AF1 Canis familiaris ENSCAFG00000010572 N 0.842
U2AF1 Meleagris gallopavo ENSMGAG00000014587 N 0.842
U2af1 Dipodomys ordii ENSDORG00000000211 N 0.842
U2AF1 Tupaia belangeri ENSTBEG00000000453 N 0.842
e_gw1.49.82.1 Lottia gigantea e_gw1.49.82.1 N 0.836
AGAP002956 Anopheles gambiae AGAP002956 N 0.833
CpipJ_CPIJ016711 Culex pipiens CpipJ_CPIJ016711 N 0.833
CPIJ016711 Culex quinquefasciatus CPIJ016711 N 0.833
CPIJ003901 Culex quinquefasciatus CPIJ003901 N 0.833
AAEL006713 Aedes aegypti AAEL006713 N 0.833
PTSG_08923 Salpingoeca rosetta PTSG_08923 N 0.833
CpipJ_CPIJ003901 Culex pipiens CpipJ_CPIJ003901 N 0.833
ENSORLG00000008857 Oryzias latipes ENSORLG00000008857 N 0.833
e_gw1.35.104.1 Trichoplax adhaerens e_gw1.35.104.1 N 0.831
Smp_093100 Schistosoma mansoni Smp_093100 N 0.826
GL25824 Drosophila persimilis FBgn0163408 N 0.825
GD22967 Drosophila simulans FBgn0194360 N 0.825
GM16679 Drosophila sechellia FBgn0171592 N 0.825
GJ17240 Drosophila virilis FBgn0204416 N 0.825
GK14823 Drosophila willistoni FBgn0216828 N 0.825
GE16227 Drosophila yakuba FBgn0233767 N 0.825
184981 Helobdella robusta 184981 N 0.825
GI15018 Drosophila mojavensis FBgn0137768 N 0.825
GA17536-RA Drosophila pseudoobscura FBgn0077547 N 0.825
GF24893 Drosophila ananassae FBgn0101885 N 0.825
GG24659 Drosophila erecta FBgn0116791 N 0.825
GH10217 Drosophila grimshawi FBgn0117698 N 0.825
U2af38 Drosophila melanogaster FBgn0017457 N 0.825
U2af1l4 Mus musculus ENSMUSG00000078765 N 0.817
U2AF1L4 Sus scrofa ENSSSCG00000002896 N 0.817
U2AF1L4 Equus caballus ENSECAG00000017941 N 0.817
U2AF4_BOVIN Bos taurus ENSBTAG00000023610 N 0.817
U2AF1L4 Oryctolagus cuniculus ENSOCUG00000013434 N 0.817
U2AF1L4 Loxodonta africana ENSLAFG00000012923 N 0.817
U2af1l4 Rattus norvegicus ENSRNOG00000024497 N 0.817
XP_002156010.1 Hydra magnipapillata XP_002156010.1 N 0.816
XP_001191705.1 Strongylocentrotus purpuratus XP_001191705.1 N 0.812
U2AF1L4 Monodelphis domestica ENSMODG00000014003 N 0.809
Aqu1.226671 Amphimedon queenslandica Aqu1.226671 N 0.807
U2AF1L4 Gorilla gorilla ENSGGOG00000016828 N 0.800
Sjc_0045900 Schistosoma japonicum Sjc_0045900 N 0.794
U2AF1L4 Homo sapiens ENSG00000161265 N 0.791
ENSGGOG00000025487 Gorilla gorilla ENSGGOG00000025487 N 0.789
XP_002167624.1 Hydra magnipapillata XP_002167624.1 N 0.781
U2AF1L4 Pan troglodytes ENSPTRG00000010860 N 0.765
Q9YHU4_FUGRU Takifugu rubripes ENSTRUG00000010538 N 0.750
ENSTNIG00000013914 Tetraodon nigroviridis ENSTNIG00000013914 N 0.750
ISCW019664 Ixodes scapularis ISCW019664 N 0.741
DGIL_AUG5s4512g5t1 Acyrtosiphon pisum DGIL_AUG5s4512g5t1 N 0.733
SPPG_02695 Spizellomyces punctatus SPPG_02695 N 0.723
CAOG_00458 Capsaspora owczarzaki CAOG_00458 N 0.713
ENSGGOG00000000469 Gorilla gorilla ENSGGOG00000000469 N 0.704