Sjc_0045900 (Schistosoma japonicum)
CCCH ZF,RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH)
PF00076 (RRM_1) 		IPR000571
IPR000504 		Sjc_0045900 T01037_0.6 SDSPB (2008-Sep-5)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
CPRT0000004319 CCCH ZF 13 39
CPRT0000004319 RRM 70 141
CPRT0000004319 CCCH ZF 149 175

Links

Other CCCH ZF,RRM family RBPs
Other Schistosoma japonicum RBPs

89 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Smp_093100 Schistosoma mansoni Smp_093100 N 0.952
PHUM349680 Pediculus humanus PHUM349680 N 0.810
BGIBMGA010333 Bombyx mori BGIBMGA010333 N 0.810
e_gw1.49.82.1 Lottia gigantea e_gw1.49.82.1 N 0.810
ENSCING00000004086 Ciona intestinalis ENSCING00000004086 N 0.810
nasonia_NCBI_hmm622923 Nasonia vitripennis nasonia_NCBI_hmm622923 N 0.810
estExt_Genewise1.C_3650003 Capitella teleta estExt_Genewise1.C_3650003 N 0.810
e_gw.8.587.1 Branchiostoma floridae e_gw.8.587.1 N 0.810
AAI08559 Xenopus laevis AAI08559 N 0.810
e_gw.8.588.1 Branchiostoma floridae e_gw.8.588.1 N 0.810
ENSTNIG00000013914 Tetraodon nigroviridis ENSTNIG00000013914 N 0.803
Q9YHU4_FUGRU Takifugu rubripes ENSTRUG00000010538 N 0.803
U2AF1 Macaca mulatta ENSMMUG00000022769 N 0.802
U2AF1 Homo sapiens ENSG00000160201 N 0.802
Q98TR0_CHICK Gallus gallus ENSGALG00000016198 N 0.802
U2AF1 Loxodonta africana ENSLAFG00000011460 N 0.802
U2AF1 Microcebus murinus ENSMICG00000013835 N 0.802
U2AF1 Pan troglodytes ENSPTRG00000013952 N 0.802
U2AF1 Tarsius syrichta ENSTSYG00000006799 N 0.802
e_gw1.30.183.1 Daphnia pulex e_gw1.30.183.1 N 0.802
U2AF1 Echinops telfairi ENSETEG00000002200 N 0.802
U2AF1 Tetraodon nigroviridis ENSTNIG00000008311 N 0.802
U2AF1 Oryzias latipes ENSORLG00000006182 N 0.802
U2AF1 Taeniopygia guttata ENSTGUG00000005826 N 0.802
U2af1 Mus musculus ENSMUSG00000061613 N 0.802
U2AF1 Monodelphis domestica ENSMODG00000021029 N 0.802
U2AF1 Anolis carolinensis ENSACAG00000017836 N 0.802
U2AF1_BOVIN Bos taurus ENSBTAG00000011645 N 0.802
amel4_ncbi_hmm38272 Apis mellifera amel4_ncbi_hmm38272 N 0.802
U2AF1 Cavia porcellus ENSCPOG00000004893 N 0.802
DGIL_AUG5s4512g5t1 Acyrtosiphon pisum DGIL_AUG5s4512g5t1 N 0.794
Aqu1.219575 Amphimedon queenslandica Aqu1.219575 N 0.794
CPIJ003901 Culex quinquefasciatus CPIJ003901 N 0.794
AGAP002956 Anopheles gambiae AGAP002956 N 0.794
AAEL006713 Aedes aegypti AAEL006713 N 0.794
CPIJ016711 Culex quinquefasciatus CPIJ016711 N 0.794
CpipJ_CPIJ016711 Culex pipiens CpipJ_CPIJ016711 N 0.794
ENSGACG00000003454 Gasterosteus aculeatus ENSGACG00000003454 N 0.794
U2AF1 Gasterosteus aculeatus ENSGACG00000014605 N 0.794
ENSCSAVG00000000329 Ciona savignyi ENSCSAVG00000000329 N 0.794
u2af1 Danio rerio ENSDARG00000015325 N 0.794
CpipJ_CPIJ003901 Culex pipiens CpipJ_CPIJ003901 N 0.794
U2AF1 Procavia capensis ENSPCAG00000013413 N 0.786
LOC100415206 Callithrix jacchus ENSCJAG00000015843 N 0.786
U2AF1 Takifugu rubripes ENSTRUG00000013815 N 0.786
GG24659 Drosophila erecta FBgn0116791 N 0.778
GF24893 Drosophila ananassae FBgn0101885 N 0.778
U2AF1 Vicugna pacos ENSVPAG00000002856 N 0.778
U2af38 Drosophila melanogaster FBgn0017457 N 0.778
GA17536-RA Drosophila pseudoobscura FBgn0077547 N 0.778
GM16679 Drosophila sechellia FBgn0171592 N 0.778
GE16227 Drosophila yakuba FBgn0233767 N 0.778
e_gw1.35.104.1 Trichoplax adhaerens e_gw1.35.104.1 N 0.778
XP_001191705.1 Strongylocentrotus purpuratus XP_001191705.1 N 0.778
Ame_R019749 Ailuropoda melanoleuca Ame_R019749 N 0.778
GK14823 Drosophila willistoni FBgn0216828 N 0.778
GJ17240 Drosophila virilis FBgn0204416 N 0.778
GI15018 Drosophila mojavensis FBgn0137768 N 0.778
GL25824 Drosophila persimilis FBgn0163408 N 0.778
GD22967 Drosophila simulans FBgn0194360 N 0.778
GH10217 Drosophila grimshawi FBgn0117698 N 0.778
U2AF1 Spermophilus tridecemlineatus ENSSTOG00000012766 N 0.778
U2AF1 Tupaia belangeri ENSTBEG00000000453 N 0.778
U2AF1 Canis familiaris ENSCAFG00000010572 N 0.778
U2AF1 Meleagris gallopavo ENSMGAG00000014587 N 0.778
LOC100057570 Equus caballus ENSECAG00000015558 N 0.778
U2AF1 Ornithorhynchus anatinus ENSOANG00000006463 N 0.778
U2AF1 Myotis lucifugus ENSMLUG00000014756 N 0.778
U2af1 Dipodomys ordii ENSDORG00000000211 N 0.778
U2AF1 Pteropus vampyrus ENSPVAG00000016992 N 0.778
e_gw.121.26.1 Nematostella vectensis e_gw.121.26.1 N 0.770
ENSORLG00000008857 Oryzias latipes ENSORLG00000008857 N 0.770
184981 Helobdella robusta 184981 N 0.770
U2AF1L4 Equus caballus ENSECAG00000017941 N 0.762
U2AF1L4 Loxodonta africana ENSLAFG00000012923 N 0.762
U2AF1L4 Sus scrofa ENSSSCG00000002896 N 0.762
U2AF4_BOVIN Bos taurus ENSBTAG00000023610 N 0.762
U2AF1L4 Oryctolagus cuniculus ENSOCUG00000013434 N 0.762
U2af1l4 Rattus norvegicus ENSRNOG00000024497 N 0.762
U2af1l4 Mus musculus ENSMUSG00000078765 N 0.762
U2AF1L4 Monodelphis domestica ENSMODG00000014003 N 0.754
U2AF1L4 Gorilla gorilla ENSGGOG00000016828 N 0.746
U2AF1L4 Homo sapiens ENSG00000161265 N 0.738
U2AF1L4 Pan troglodytes ENSPTRG00000010860 N 0.734
XP_002156010.1 Hydra magnipapillata XP_002156010.1 N 0.722
PTSG_08923 Salpingoeca rosetta PTSG_08923 N 0.722
ENSGGOG00000025487 Gorilla gorilla ENSGGOG00000025487 N 0.722
SPPG_02695 Spizellomyces punctatus SPPG_02695 N 0.722
Aqu1.226671 Amphimedon queenslandica Aqu1.226671 N 0.714