XM_002871776.1 (Arabidopsis lyrata)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 fgenesh2_kg.6__1872__AT5G18550.1 T03855_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
fgenesh2_kg.6__1872__AT5G18550.1 CCCH ZF 52 78
fgenesh2_kg.6__1872__AT5G18550.1 CCCH ZF 98 124
fgenesh2_kg.6__1872__AT5G18550.1 CCCH ZF 147 173
fgenesh2_kg.6__1872__AT5G18550.1 CCCH ZF 301 327
fgenesh2_kg.6__1872__AT5G18550.1 CCCH ZF 346 372

Links

Other CCCH ZF family RBPs
Other Arabidopsis lyrata RBPs

17 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AT5G18550 Arabidopsis thaliana AT5G18550-TAIR-G N 0.985
AT3G06410 Arabidopsis thaliana AT3G06410-TAIR-G N 0.896
XM_002884531.1 Arabidopsis lyrata fgenesh2_kg.3__645__AT3G06410.1 N 0.881
PK29685.1 Cannabis sativa PK29685.1 N 0.785
GSVIVG00017774001 Vitis vinifera GSVIVG00017774001 N 0.785
MDP0000319251 Malus x domestica MDP0000319251 N 0.778
29726.m004014 Ricinus communis 29726.m004014 N 0.778
ppa005056m Prunus persica ppa005056m N 0.778
cassava19141.valid.m1 Manihot esculenta cassava19141.valid.m1 N 0.778
cassava43930.valid.m1 Manihot esculenta cassava43930.valid.m1 N 0.770
Medtr8g139290 Medicago truncatula Medtr8g139290 N 0.763
MDP0000535412 Malus x domestica MDP0000535412 N 0.763
Glyma07g37980.1 Glycine max Glyma07g37980.1 N 0.748
Glyma17g02720.1 Glycine max Glyma17g02720.1 N 0.748
mgf002685m Mimulus guttatus mgf002685m N 0.748
mgf008934m Mimulus guttatus mgf008934m N 0.741
BRADI2G09350 Brachypodium distachyon BRADI2G09350 N 0.719