AT3G06410 (Arabidopsis thaliana)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 AT3G06410-TAIR-G T01898_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
AT3G06410.1-P CCCH ZF 55 81
AT3G06410.1-P CCCH ZF 101 127
AT3G06410.1-P CCCH ZF 149 175
AT3G06410.1-P CCCH ZF 308 334
AT3G06410.1-P CCCH ZF 354 380

Links

Other CCCH ZF family RBPs
Other Arabidopsis thaliana RBPs

20 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
XM_002884531.1 Arabidopsis lyrata fgenesh2_kg.3__645__AT3G06410.1 N 0.985
AT5G18550 Arabidopsis thaliana AT5G18550-TAIR-G N 0.896
XM_002871776.1 Arabidopsis lyrata fgenesh2_kg.6__1872__AT5G18550.1 N 0.896
GSVIVG00017774001 Vitis vinifera GSVIVG00017774001 N 0.807
29726.m004014 Ricinus communis 29726.m004014 N 0.793
cassava19141.valid.m1 Manihot esculenta cassava19141.valid.m1 N 0.793
ppa005056m Prunus persica ppa005056m N 0.793
MDP0000319251 Malus x domestica MDP0000319251 N 0.785
PK29685.1 Cannabis sativa PK29685.1 N 0.785
cassava43930.valid.m1 Manihot esculenta cassava43930.valid.m1 N 0.785
Medtr8g139290 Medicago truncatula Medtr8g139290 N 0.770
MDP0000535412 Malus x domestica MDP0000535412 N 0.770
Glyma07g37980.1 Glycine max Glyma07g37980.1 N 0.763
Glyma17g02720.1 Glycine max Glyma17g02720.1 N 0.763
mgf002685m Mimulus guttatus mgf002685m N 0.748
mgf008934m Mimulus guttatus mgf008934m N 0.741
cassava29576.valid.m1 Manihot esculenta cassava29576.valid.m1 N 0.719
BRADI2G09350 Brachypodium distachyon BRADI2G09350 N 0.711
Glyma10g02550.1 Glycine max Glyma10g02550.1 N 0.704
GSVIVG00010980001 Vitis vinifera GSVIVG00010980001 N 0.704