mgf008934m (Mimulus guttatus)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 mgf008934m T05623_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
mgf008934m CCCH ZF 38 64
mgf008934m CCCH ZF 84 110
mgf008934m CCCH ZF 130 156
mgf008934m CCCH ZF 284 309
mgf008934m CCCH ZF 329 355

Links

Other CCCH ZF family RBPs
Other Mimulus guttatus RBPs

27 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
mgf002685m Mimulus guttatus mgf002685m N 0.867
cassava43930.valid.m1 Manihot esculenta cassava43930.valid.m1 N 0.837
29726.m004014 Ricinus communis 29726.m004014 N 0.837
PK29685.1 Cannabis sativa PK29685.1 N 0.822
ppa005056m Prunus persica ppa005056m N 0.815
MDP0000319251 Malus x domestica MDP0000319251 N 0.815
GSVIVG00017774001 Vitis vinifera GSVIVG00017774001 N 0.815
cassava19141.valid.m1 Manihot esculenta cassava19141.valid.m1 N 0.807
mgf026218m Mimulus guttatus mgf026218m N 0.800
MDP0000535412 Malus x domestica MDP0000535412 N 0.800
BRADI2G09350 Brachypodium distachyon BRADI2G09350 N 0.800
Medtr8g139290 Medicago truncatula Medtr8g139290 N 0.793
Glyma07g37980.1 Glycine max Glyma07g37980.1 N 0.785
Glyma17g02720.1 Glycine max Glyma17g02720.1 N 0.770
GRMZM2G086994 Zea mays GRMZM2G086994 N 0.756
SB03G009930 Sorghum bicolor Sb03g009930 N 0.748
LOC_Os01g15460 Oryza sativa LOC_Os01g15460 N 0.748
XM_002871776.1 Arabidopsis lyrata fgenesh2_kg.6__1872__AT5G18550.1 N 0.741
GRMZM2G036837 Zea mays GRMZM2G036837 N 0.741
AT5G18550 Arabidopsis thaliana AT5G18550-TAIR-G N 0.741
AT3G06410 Arabidopsis thaliana AT3G06410-TAIR-G N 0.741
XM_002884531.1 Arabidopsis lyrata fgenesh2_kg.3__645__AT3G06410.1 N 0.726
cassava29576.valid.m1 Manihot esculenta cassava29576.valid.m1 N 0.719
Glyma10g02550.1 Glycine max Glyma10g02550.1 N 0.719
Glyma02g17260.1 Glycine max Glyma02g17260.1 N 0.711
gw1.102.25.1 Physcomitrella patens gw1.102.25.1 N 0.711
ppa005229m Prunus persica ppa005229m N 0.704