CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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MDP0000535412
(
Malus x domestica
)
CCCH ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
IPR000571
MDP0000535412
T06379_0.6
Superfamily (2011-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
MDP0000535412
CCCH ZF
47
73
PDEADCSYYLRTGICGYGSRCRYNHPR
MDP0000535412
CCCH ZF
94
119
SQPVCQYYMRTGTCKFGASCKFHHPK
MDP0000535412
CCCH ZF
139
165
PGERECSYYVKTGQCKFSATCKFHHPQ
MDP0000535412
CCCH ZF
300
326
PGQPECQYYMRTGDCKFGSSCRYHHPP
MDP0000535412
CCCH ZF
346
372
PGAPLCTHYQQRGACKFGPACKFDHPI
Links
Other
CCCH ZF
family RBPs
Other
Malus x domestica
RBPs
43 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
MDP0000319251
Malus x domestica
MDP0000319251
N
0.963
ppa005056m
Prunus persica
ppa005056m
N
0.933
cassava19141.valid.m1
Manihot esculenta
cassava19141.valid.m1
N
0.888
29726.m004014
Ricinus communis
29726.m004014
N
0.881
cassava43930.valid.m1
Manihot esculenta
cassava43930.valid.m1
N
0.859
PK29685.1
Cannabis sativa
PK29685.1
N
0.858
GSVIVG00017774001
Vitis vinifera
GSVIVG00017774001
N
0.851
Medtr8g139290
Medicago truncatula
Medtr8g139290
N
0.836
Glyma07g37980.1
Glycine max
Glyma07g37980.1
N
0.828
Glyma17g02720.1
Glycine max
Glyma17g02720.1
N
0.813
mgf008934m
Mimulus guttatus
mgf008934m
N
0.800
mgf002685m
Mimulus guttatus
mgf002685m
N
0.799
AT3G06410
Arabidopsis thaliana
AT3G06410-TAIR-G
N
0.770
BRADI2G09350
Brachypodium distachyon
BRADI2G09350
N
0.763
XM_002884531.1
Arabidopsis lyrata
fgenesh2_kg.3__645__AT3G06410.1
N
0.763
AT5G18550
Arabidopsis thaliana
AT5G18550-TAIR-G
N
0.763
XM_002871776.1
Arabidopsis lyrata
fgenesh2_kg.6__1872__AT5G18550.1
N
0.763
ppa005229m
Prunus persica
ppa005229m
N
0.761
Glyma10g02550.1
Glycine max
Glyma10g02550.1
N
0.754
GSVIVG00010980001
Vitis vinifera
GSVIVG00010980001
N
0.754
GRMZM2G086994
Zea mays
GRMZM2G086994
N
0.748
mgf026218m
Mimulus guttatus
mgf026218m
N
0.746
MDP0000207283
Malus x domestica
MDP0000207283
N
0.746
cassava29576.valid.m1
Manihot esculenta
cassava29576.valid.m1
N
0.746
29647.m002009
Ricinus communis
29647.m002009
N
0.746
Glyma02g17260.1
Glycine max
Glyma02g17260.1
N
0.739
SB03G009930
Sorghum bicolor
Sb03g009930
N
0.733
LOC_Os01g15460
Oryza sativa
LOC_Os01g15460
N
0.731
mgf001793m
Mimulus guttatus
mgf001793m
N
0.731
mgf010716m
Mimulus guttatus
mgf010716m
N
0.731
mgf004851m
Mimulus guttatus
mgf004851m
N
0.731
XM_002880280.1
Arabidopsis lyrata
scaffold_403761.1
N
0.726
GRMZM2G036837
Zea mays
GRMZM2G036837
N
0.726
AT2G47850
Arabidopsis thaliana
AT2G47850-TAIR-G
N
0.726
Glyma10g31370.1
Glycine max
Glyma10g31370.1
N
0.724
cassava17662.valid.m1
Manihot esculenta
cassava17662.valid.m1
N
0.724
30128.m009030
Ricinus communis
30128.m009030
N
0.724
chr1.CM1413.200.nd
Lotus japonicus
chr1.CM1413.200.nd
N
0.716
LOC_Os01g15350
Oryza sativa
LOC_Os01g15350
N
0.711
gw1.102.25.1
Physcomitrella patens
gw1.102.25.1
N
0.709
ppa005813m
Prunus persica
ppa005813m
N
0.701
Glyma09g38650.1
Glycine max
Glyma09g38650.1
N
0.701
Glyma20g36140.1
Glycine max
Glyma20g36140.1
N
0.701