MDP0000535412 (Malus x domestica)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 MDP0000535412 T06379_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
MDP0000535412 CCCH ZF 47 73
MDP0000535412 CCCH ZF 94 119
MDP0000535412 CCCH ZF 139 165
MDP0000535412 CCCH ZF 300 326
MDP0000535412 CCCH ZF 346 372

Links

Other CCCH ZF family RBPs
Other Malus x domestica RBPs

43 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
MDP0000319251 Malus x domestica MDP0000319251 N 0.963
ppa005056m Prunus persica ppa005056m N 0.933
cassava19141.valid.m1 Manihot esculenta cassava19141.valid.m1 N 0.888
29726.m004014 Ricinus communis 29726.m004014 N 0.881
cassava43930.valid.m1 Manihot esculenta cassava43930.valid.m1 N 0.859
PK29685.1 Cannabis sativa PK29685.1 N 0.858
GSVIVG00017774001 Vitis vinifera GSVIVG00017774001 N 0.851
Medtr8g139290 Medicago truncatula Medtr8g139290 N 0.836
Glyma07g37980.1 Glycine max Glyma07g37980.1 N 0.828
Glyma17g02720.1 Glycine max Glyma17g02720.1 N 0.813
mgf008934m Mimulus guttatus mgf008934m N 0.800
mgf002685m Mimulus guttatus mgf002685m N 0.799
AT3G06410 Arabidopsis thaliana AT3G06410-TAIR-G N 0.770
BRADI2G09350 Brachypodium distachyon BRADI2G09350 N 0.763
XM_002884531.1 Arabidopsis lyrata fgenesh2_kg.3__645__AT3G06410.1 N 0.763
AT5G18550 Arabidopsis thaliana AT5G18550-TAIR-G N 0.763
XM_002871776.1 Arabidopsis lyrata fgenesh2_kg.6__1872__AT5G18550.1 N 0.763
ppa005229m Prunus persica ppa005229m N 0.761
Glyma10g02550.1 Glycine max Glyma10g02550.1 N 0.754
GSVIVG00010980001 Vitis vinifera GSVIVG00010980001 N 0.754
GRMZM2G086994 Zea mays GRMZM2G086994 N 0.748
mgf026218m Mimulus guttatus mgf026218m N 0.746
MDP0000207283 Malus x domestica MDP0000207283 N 0.746
cassava29576.valid.m1 Manihot esculenta cassava29576.valid.m1 N 0.746
29647.m002009 Ricinus communis 29647.m002009 N 0.746
Glyma02g17260.1 Glycine max Glyma02g17260.1 N 0.739
SB03G009930 Sorghum bicolor Sb03g009930 N 0.733
LOC_Os01g15460 Oryza sativa LOC_Os01g15460 N 0.731
mgf001793m Mimulus guttatus mgf001793m N 0.731
mgf010716m Mimulus guttatus mgf010716m N 0.731
mgf004851m Mimulus guttatus mgf004851m N 0.731
XM_002880280.1 Arabidopsis lyrata scaffold_403761.1 N 0.726
GRMZM2G036837 Zea mays GRMZM2G036837 N 0.726
AT2G47850 Arabidopsis thaliana AT2G47850-TAIR-G N 0.726
Glyma10g31370.1 Glycine max Glyma10g31370.1 N 0.724
cassava17662.valid.m1 Manihot esculenta cassava17662.valid.m1 N 0.724
30128.m009030 Ricinus communis 30128.m009030 N 0.724
chr1.CM1413.200.nd Lotus japonicus chr1.CM1413.200.nd N 0.716
LOC_Os01g15350 Oryza sativa LOC_Os01g15350 N 0.711
gw1.102.25.1 Physcomitrella patens gw1.102.25.1 N 0.709
ppa005813m Prunus persica ppa005813m N 0.701
Glyma09g38650.1 Glycine max Glyma09g38650.1 N 0.701
Glyma20g36140.1 Glycine max Glyma20g36140.1 N 0.701