CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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AT5G18550
(
Arabidopsis thaliana
)
CCCH ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
IPR000571
AT5G18550-TAIR-G
T01915_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
AT5G18550.1-P
CCCH ZF
52
78
PDEPDCIYYLRTGVCGYGSRCRFNHPR
AT5G18550.1-P
CCCH ZF
98
124
MGQPVCQHFMRTGTCKFGASCKYHHPR
AT5G18550.1-P
CCCH ZF
146
172
PGEKECSYFMRTGQCKFGSTCRYHHPV
AT5G18550.1-P
CCCH ZF
301
327
PEQPECQYFMRTGDCKFGTSCRFHHPM
AT5G18550.1-P
CCCH ZF
346
372
PGAVPCTHFAQHGICKFGPACKFDHSL
Links
Other
CCCH ZF
family RBPs
Other
Arabidopsis thaliana
RBPs
20 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
XM_002871776.1
Arabidopsis lyrata
fgenesh2_kg.6__1872__AT5G18550.1
N
0.985
AT3G06410
Arabidopsis thaliana
AT3G06410-TAIR-G
N
0.896
XM_002884531.1
Arabidopsis lyrata
fgenesh2_kg.3__645__AT3G06410.1
N
0.881
GSVIVG00017774001
Vitis vinifera
GSVIVG00017774001
N
0.785
PK29685.1
Cannabis sativa
PK29685.1
N
0.785
ppa005056m
Prunus persica
ppa005056m
N
0.778
MDP0000319251
Malus x domestica
MDP0000319251
N
0.778
29726.m004014
Ricinus communis
29726.m004014
N
0.778
cassava19141.valid.m1
Manihot esculenta
cassava19141.valid.m1
N
0.778
cassava43930.valid.m1
Manihot esculenta
cassava43930.valid.m1
N
0.770
Medtr8g139290
Medicago truncatula
Medtr8g139290
N
0.763
MDP0000535412
Malus x domestica
MDP0000535412
N
0.763
Glyma17g02720.1
Glycine max
Glyma17g02720.1
N
0.756
Glyma07g37980.1
Glycine max
Glyma07g37980.1
N
0.756
mgf002685m
Mimulus guttatus
mgf002685m
N
0.756
mgf008934m
Mimulus guttatus
mgf008934m
N
0.741
BRADI2G09350
Brachypodium distachyon
BRADI2G09350
N
0.726
GRMZM2G086994
Zea mays
GRMZM2G086994
N
0.711
SB03G009930
Sorghum bicolor
Sb03g009930
N
0.704
GRMZM2G036837
Zea mays
GRMZM2G036837
N
0.704