SNAPOd2T00016811001 (Oikopleura dioica)
KH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00013 (KH_1) IPR018111 SNAPOd2T00016811001 T20530_0.6 Genoscope (2013-Jan-11)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
CG11360
M122_0.6 		Drosophila melanogaster GAGUDW RNAcompete
Ray et al.(2013)
RNCMPT00129 		0.727
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
SNAPOd2T00016811001 KH 32 92
SNAPOd2T00016811001 KH 127 186

Links

Other KH family RBPs
Other Oikopleura dioica RBPs

95 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ENSCING00000002603 Ciona intestinalis ENSCING00000002603 I 0.754
MEX3C Dasypus novemcinctus ENSDNOG00000006544 I 0.746
MEX3C Equus caballus ENSECAG00000021727 I 0.746
MEX3C Cavia porcellus ENSCPOG00000009646 I 0.746
MEX3C Homo sapiens ENSG00000176624 I 0.746
Mex3c Mus musculus ENSMUSG00000037253 I 0.746
MEX3C Choloepus hoffmanni ENSCHOG00000004915 I 0.746
LOC100410023 Callithrix jacchus ENSCJAG00000001902 I 0.746
mex3c Xenopus tropicalis ENSXETG00000022367 I 0.746
ENSCPOG00000008241 Cavia porcellus ENSCPOG00000008241 I 0.746
MEX3C Tursiops truncatus ENSTTRG00000004570 I 0.746
Mex3c Rattus norvegicus ENSRNOG00000015777 I 0.746
MEX3C Monodelphis domestica ENSMODG00000011001 I 0.746
MEX3C Pteropus vampyrus ENSPVAG00000015135 I 0.746
MEX3C Macaca mulatta ENSMMUG00000023652 I 0.746
MEX3B Tetraodon nigroviridis ENSTNIG00000003398 I 0.746
MEX3C Gorilla gorilla ENSGGOG00000014875 I 0.746
MEX3C Loxodonta africana ENSLAFG00000027818 I 0.746
MEX3B Takifugu rubripes ENSTRUG00000000367 I 0.746
MEX3C Pan troglodytes ENSPTRG00000010029 I 0.746
ENSOCUG00000012549 Oryctolagus cuniculus ENSOCUG00000012549 I 0.746
MEX3C Procavia capensis ENSPCAG00000009258 I 0.746
Ame_R004658 Ailuropoda melanoleuca Ame_R004658 I 0.746
estExt_Genewise1.C_sca_540218 Lottia gigantea estExt_Genewise1.C_sca_540218 I 0.746
amel4_ncbi_hmm6985 Apis mellifera amel4_ncbi_hmm6985 I 0.746
AAI28670 Xenopus laevis AAI28670 I 0.746
GJ18673 Drosophila virilis FBgn0205827 I 0.744
CBN20397 Caenorhabditis brenneri CBN20397 I 0.744
GK13594 Drosophila willistoni FBgn0215602 I 0.744
CRE03823 Caenorhabditis remanei CRE03823 I 0.744
CBN24563 Caenorhabditis brenneri CBN24563 I 0.744
XP_002168292.1 Hydra magnipapillata XP_002168292.1 I 0.744
GH23938 Drosophila grimshawi FBgn0131395 I 0.744
MEX3B Loxodonta africana ENSLAFG00000006027 I 0.738
MEX3B Gorilla gorilla ENSGGOG00000000597 I 0.738
MEX3B Macaca mulatta ENSMMUG00000018639 I 0.738
e_gw1.15.409.1 Daphnia pulex e_gw1.15.409.1 I 0.738
MEX3B Monodelphis domestica ENSMODG00000019387 I 0.738
estExt_fgenesh2_pg.C_2010087 Branchiostoma floridae estExt_fgenesh2_pg.C_2010087 I 0.738
MEX3B Pan troglodytes ENSPTRG00000007373 I 0.738
MEX3B Bos taurus ENSBTAG00000016630 I 0.738
Ame_R007174 Ailuropoda melanoleuca Ame_R007174 I 0.738
MEX3B Homo sapiens ENSG00000183496 I 0.738
nasonia_NCBI_hmm456104 Nasonia vitripennis nasonia_NCBI_hmm456104 I 0.738
MEX3B Danio rerio ENSDARG00000058369 I 0.738
ENSPPYG00000006723 Pongo pygmaeus ENSPPYG00000006723 I 0.738
BAH79688 Xenopus laevis BAH79688 I 0.738
MEX3B Callithrix jacchus ENSCJAG00000008043 I 0.738
AAI30070 Xenopus laevis AAI30070 I 0.738
MEX3B Pteropus vampyrus ENSPVAG00000000093 I 0.738
MEX3B Ochotona princeps ENSOPRG00000009604 I 0.738
A1L3F4 Xenopus laevis A1L3F4 I 0.738
MEX3B Equus caballus ENSECAG00000013497 I 0.738
mex-3 Caenorhabditis elegans F53G12.5 I 0.736
MEX3A Danio rerio ENSDARG00000076638 I 0.736
MEX3C Canis familiaris ENSCAFG00000000162 I 0.730
MEX3B Macropus eugenii ENSMEUG00000002402 I 0.730
MEX3C Takifugu rubripes ENSTRUG00000011888 I 0.730
MEX3C Gasterosteus aculeatus ENSGACG00000007490 I 0.730
MEX3C Oryzias latipes ENSORLG00000004985 I 0.730
GA10947-RA Drosophila pseudoobscura FBgn0071003 I 0.727
GD24410 Drosophila simulans FBgn0195748 I 0.727
GE14558 Drosophila yakuba FBgn0232157 I 0.727
GM26809 Drosophila sechellia FBgn0181661 I 0.727
GL18139 Drosophila persimilis FBgn0155742 I 0.727
GF20555 Drosophila ananassae FBgn0097561 I 0.727
GG16398 Drosophila erecta FBgn0108630 I 0.727
CG11360 Drosophila melanogaster FBgn0039920 D 0.727
MEX3A Gorilla gorilla ENSGGOG00000004513 I 0.727
MEX3A Bos taurus ENSBTAG00000019158 I 0.727
CJA18034 Caenorhabditis japonica CJA18034 I 0.727
LOC100410413 Callithrix jacchus ENSCJAG00000007711 I 0.727
MEX3A Cavia porcellus ENSCPOG00000020219 I 0.727
ENSPPYG00000000729 Pongo pygmaeus ENSPPYG00000000729 I 0.727
CBG05100 Caenorhabditis briggsae CBG05100 I 0.727
MEX3A Macaca mulatta ENSMMUG00000022307 I 0.727
MEX3A Oryctolagus cuniculus ENSOCUG00000005640 I 0.727
MEX3A Ochotona princeps ENSOPRG00000002937 I 0.727
gw.320.9.1 Nematostella vectensis gw.320.9.1 I 0.727
MEX3A Monodelphis domestica ENSMODG00000016954 I 0.727
Ame_R015561 Ailuropoda melanoleuca Ame_R015561 I 0.727
Mex3a Dipodomys ordii ENSDORG00000002921 I 0.727
XP_786425.2 Strongylocentrotus purpuratus XP_786425.2 I 0.721
MEX3D Takifugu rubripes ENSTRUG00000007986 I 0.721
MEX3B Gasterosteus aculeatus ENSGACG00000012530 I 0.721
MEX3D Gasterosteus aculeatus ENSGACG00000015299 I 0.721
MEX3D Tetraodon nigroviridis ENSTNIG00000015325 I 0.721
XP_001175528.1 Strongylocentrotus purpuratus XP_001175528.1 I 0.721
AAI30196 Xenopus laevis AAI30196 I 0.719
MEX3B Dasypus novemcinctus ENSDNOG00000012736 I 0.713
MEX3A Tursiops truncatus ENSTTRG00000013346 I 0.711
MEX3D Monodelphis domestica ENSMODG00000004116 I 0.705
MEX3D Macropus eugenii ENSMEUG00000016404 I 0.705
MEX3A Pteropus vampyrus ENSPVAG00000010333 I 0.702
Aqu1.215178 Amphimedon queenslandica Aqu1.215178 I 0.702