chr1.CM0141.280.nc (Lotus japonicus)
KH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00013 (KH_1) IPR018111 chr1.CM0141.280.nc T21621_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
chr1.CM0141.280.nc KH 48 108
chr1.CM0141.280.nc KH 148 215
chr1.CM0141.280.nc KH 290 345
chr1.CM0141.280.nc KH 376 443

Links

Other KH family RBPs
Other Lotus japonicus RBPs

27 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Glyma18g49600.1 Glycine max Glyma18g49600.1 N 0.917
Glyma09g37070.1 Glycine max Glyma09g37070.1 N 0.909
LjSGA_002278.2 Lotus japonicus LjSGA_002278.2 N 0.878
Glyma19g02840.1 Glycine max Glyma19g02840.1 N 0.870
Medtr6g013130 Medicago truncatula Medtr6g013130 N 0.858
Medtr7g010360 Medicago truncatula Medtr7g010360 N 0.854
Glyma13g05520.1 Glycine max Glyma13g05520.1 N 0.846
GSVIVG00011439001 Vitis vinifera GSVIVG00011439001 N 0.819
ppa003758m Prunus persica ppa003758m N 0.818
cassava42742.valid.m1 Manihot esculenta cassava42742.valid.m1 N 0.814
cassava42740.valid.m1 Manihot esculenta cassava42740.valid.m1 N 0.814
cassava42739.valid.m1 Manihot esculenta cassava42739.valid.m1 N 0.814
cassava42741.valid.m1 Manihot esculenta cassava42741.valid.m1 N 0.814
Cucsa.158200 Cucumis sativus Cucsa.158200 N 0.810
A9PE42_POPTR Populus trichocarpa POPTR_0017s12170 N 0.810
MDP0000573228 Malus x domestica MDP0000573228 N 0.802
B9H0D1_POPTR Populus trichocarpa POPTR_0004s12220 N 0.798
PK16782.1 Cannabis sativa PK16782.1 N 0.783
GSVIVG00019958001 Vitis vinifera GSVIVG00019958001 N 0.776
mgf011898m Mimulus guttatus mgf011898m N 0.776
mgf007265m Mimulus guttatus mgf007265m N 0.776
AT5G15270 Arabidopsis thaliana AT5G15270-TAIR-G N 0.747
XM_002871611.1 Arabidopsis lyrata fgenesh2_kg.6__1509__AT5G15270.1 N 0.743
cassava12023.valid.m1 Manihot esculenta cassava12023.valid.m1 N 0.706
cassava12022.valid.m1 Manihot esculenta cassava12022.valid.m1 N 0.706
29813.m001513 Ricinus communis 29813.m001513 N 0.703
BRADI1G61230 Brachypodium distachyon BRADI1G61230 N 0.701