A9PE42_POPTR (Populus trichocarpa)
KH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00013 (KH_1) IPR018111 POPTR_0017s12170 T20229_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0017s12170.1 KH 43 101
POPTR_0017s12170.1 KH 140 207
POPTR_0017s12170.1 KH 283 338
POPTR_0017s12170.1 KH 368 435
POPTR_0017s12170.2 KH 43 101
POPTR_0017s12170.2 KH 140 207
POPTR_0017s12170.2 KH 283 338
POPTR_0017s12170.2 KH 368 435
POPTR_0017s12170.3 KH 43 101
POPTR_0017s12170.3 KH 140 207
POPTR_0017s12170.3 KH 283 338
POPTR_0017s12170.3 KH 368 435
POPTR_0017s12170.4 KH 43 101
POPTR_0017s12170.4 KH 140 207
POPTR_0017s12170.4 KH 283 338
POPTR_0017s12170.4 KH 368 435
POPTR_0017s12170.5 KH 43 101
POPTR_0017s12170.5 KH 140 207
POPTR_0017s12170.5 KH 283 338
POPTR_0017s12170.5 KH 368 435
POPTR_0017s12170.6 KH 43 101
POPTR_0017s12170.6 KH 140 207
POPTR_0017s12170.6 KH 283 338
POPTR_0017s12170.6 KH 368 435

Links

Other KH family RBPs
Other Populus trichocarpa RBPs

27 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
B9H0D1_POPTR Populus trichocarpa POPTR_0004s12220 N 0.936
cassava42741.valid.m1 Manihot esculenta cassava42741.valid.m1 N 0.869
cassava42742.valid.m1 Manihot esculenta cassava42742.valid.m1 N 0.869
cassava42740.valid.m1 Manihot esculenta cassava42740.valid.m1 N 0.869
cassava42739.valid.m1 Manihot esculenta cassava42739.valid.m1 N 0.869
GSVIVG00011439001 Vitis vinifera GSVIVG00011439001 N 0.825
ppa003758m Prunus persica ppa003758m N 0.817
chr1.CM0141.280.nc Lotus japonicus chr1.CM0141.280.nc N 0.810
mgf011898m Mimulus guttatus mgf011898m N 0.802
mgf007265m Mimulus guttatus mgf007265m N 0.802
PK16782.1 Cannabis sativa PK16782.1 N 0.801
Glyma19g02840.1 Glycine max Glyma19g02840.1 N 0.799
Cucsa.158200 Cucumis sativus Cucsa.158200 N 0.797
Glyma18g49600.1 Glycine max Glyma18g49600.1 N 0.797
MDP0000573228 Malus x domestica MDP0000573228 N 0.796
Medtr6g013130 Medicago truncatula Medtr6g013130 N 0.794
Glyma09g37070.1 Glycine max Glyma09g37070.1 N 0.790
Medtr7g010360 Medicago truncatula Medtr7g010360 N 0.789
LjSGA_002278.2 Lotus japonicus LjSGA_002278.2 N 0.787
Glyma13g05520.1 Glycine max Glyma13g05520.1 N 0.783
GSVIVG00019958001 Vitis vinifera GSVIVG00019958001 N 0.763
XM_002871611.1 Arabidopsis lyrata fgenesh2_kg.6__1509__AT5G15270.1 N 0.762
AT5G15270 Arabidopsis thaliana AT5G15270-TAIR-G N 0.758
cassava12022.valid.m1 Manihot esculenta cassava12022.valid.m1 N 0.715
cassava12023.valid.m1 Manihot esculenta cassava12023.valid.m1 N 0.715
29813.m001513 Ricinus communis 29813.m001513 N 0.705