B9H0D1_POPTR (Populus trichocarpa)
KH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00013 (KH_1) IPR018111 POPTR_0004s12220 T20198_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0004s12220.1 KH 43 101
POPTR_0004s12220.1 KH 140 207
POPTR_0004s12220.1 KH 283 338
POPTR_0004s12220.1 KH 369 436
POPTR_0004s12220.2 KH 50 117
POPTR_0004s12220.2 KH 193 248
POPTR_0004s12220.2 KH 279 346
POPTR_0004s12220.3 KH 43 101
POPTR_0004s12220.3 KH 140 207
POPTR_0004s12220.3 KH 283 338
POPTR_0004s12220.3 KH 369 436
POPTR_0004s12220.4 KH 43 101
POPTR_0004s12220.4 KH 140 207
POPTR_0004s12220.4 KH 283 338
POPTR_0004s12220.4 KH 369 436
POPTR_0004s12220.5 KH 43 101
POPTR_0004s12220.5 KH 140 207
POPTR_0004s12220.5 KH 283 338
POPTR_0004s12220.5 KH 369 436

Links

Other KH family RBPs
Other Populus trichocarpa RBPs

27 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
A9PE42_POPTR Populus trichocarpa POPTR_0017s12170 N 0.936
cassava42740.valid.m1 Manihot esculenta cassava42740.valid.m1 N 0.845
cassava42739.valid.m1 Manihot esculenta cassava42739.valid.m1 N 0.845
cassava42742.valid.m1 Manihot esculenta cassava42742.valid.m1 N 0.845
cassava42741.valid.m1 Manihot esculenta cassava42741.valid.m1 N 0.845
28649.m000222 Ricinus communis 28649.m000222 N 0.839
ppa003758m Prunus persica ppa003758m N 0.821
chr1.CM0141.280.nc Lotus japonicus chr1.CM0141.280.nc N 0.798
Medtr7g010360 Medicago truncatula Medtr7g010360 N 0.797
GSVIVG00011439001 Vitis vinifera GSVIVG00011439001 N 0.794
mgf007265m Mimulus guttatus mgf007265m N 0.794
mgf011898m Mimulus guttatus mgf011898m N 0.794
PK16782.1 Cannabis sativa PK16782.1 N 0.793
MDP0000573228 Malus x domestica MDP0000573228 N 0.792
Glyma19g02840.1 Glycine max Glyma19g02840.1 N 0.791
Cucsa.158200 Cucumis sativus Cucsa.158200 N 0.789
Glyma09g37070.1 Glycine max Glyma09g37070.1 N 0.786
Medtr6g013130 Medicago truncatula Medtr6g013130 N 0.786
Glyma18g49600.1 Glycine max Glyma18g49600.1 N 0.785
LjSGA_002278.2 Lotus japonicus LjSGA_002278.2 N 0.780
Glyma13g05520.1 Glycine max Glyma13g05520.1 N 0.772
XM_002871611.1 Arabidopsis lyrata fgenesh2_kg.6__1509__AT5G15270.1 N 0.742
AT5G15270 Arabidopsis thaliana AT5G15270-TAIR-G N 0.738
GSVIVG00019958001 Vitis vinifera GSVIVG00019958001 N 0.735
cassava12023.valid.m1 Manihot esculenta cassava12023.valid.m1 N 0.704
cassava12022.valid.m1 Manihot esculenta cassava12022.valid.m1 N 0.704