Medtr2g041730 (Medicago truncatula)
PUF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00806 (PUF) IPR001313 Medtr2g041730 T24972_0.6 PlantGDB (2010-Oct-15)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
Medtr2g041730.1 PUF 674 699
Medtr2g041730.1 PUF 701 735
Medtr2g041730.1 PUF 737 771
Medtr2g041730.1 PUF 773 807
Medtr2g041730.1 PUF 809 844
Medtr2g041730.1 PUF 846 880
Medtr2g041730.1 PUF 882 915
Medtr2g041730.1 PUF 926 958

Links

Other PUF family RBPs
Other Medicago truncatula RBPs

23 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Glyma09g06460.1 Glycine max Glyma09g06460.1 N 0.881
Glyma15g17680.1 Glycine max Glyma15g17680.1 N 0.878
Glyma13g00670.1 Glycine max Glyma13g00670.1 N 0.846
ppa000898m Prunus persica ppa000898m N 0.819
GSVIVG00031557001 Vitis vinifera GSVIVG00031557001 N 0.808
MDP0000265231 Malus x domestica MDP0000265231 N 0.801
PK12245.1 Cannabis sativa PK12245.1 N 0.801
cassava43126.valid.m1 Manihot esculenta cassava43126.valid.m1 N 0.790
POPTR_0022s00840 Populus trichocarpa POPTR_0022s00840 N 0.776
mgf002285m Mimulus guttatus mgf002285m N 0.767
MDP0000277305 Malus x domestica MDP0000277305 N 0.745
ppa016404m Prunus persica ppa016404m N 0.745
Cucsa.149730 Cucumis sativus Cucsa.149730 N 0.739
GSVIVG00029553001 Vitis vinifera GSVIVG00029553001 N 0.737
MDP0000313902 Malus x domestica MDP0000313902 N 0.726
BGIOSIBCE028530 Oryza indica BGIOSIBCE028530 N 0.724
LOC_Os08g40830 Oryza sativa LOC_Os08g40830 N 0.724
B9HK27_POPTR Populus trichocarpa POPTR_0008s00490 N 0.719
mgf006786m Mimulus guttatus mgf006786m N 0.716
cassava9350.m1 Manihot esculenta cassava9350.m1 N 0.716
e_gw1.2.1396.1 Selaginella moellendorfii e_gw1.2.1396.1 N 0.707
GRMZM2G035118 Zea mays GRMZM2G035118 N 0.707
30169.m006300 Ricinus communis 30169.m006300 N 0.706