CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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GRMZM2G035118
(
Zea mays
)
PUF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00806 (PUF)
IPR001313
GRMZM2G035118
T24941_0.6
MaizeSequence (2009-Oct-16)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
GRMZM2G035118_P01
PUF
657
691
DITGRIIEYSADQHGSRFIQQKLENCTAEEKAYVF
GRMZM2G035118_P01
PUF
693
727
EVLPHASSLMTDVFGNYVIQKFFEHGTREQRRDLA
GRMZM2G035118_P01
PUF
729
763
KLVGHVLPLSLQMYGCRVIQKALEVMELDQKIDLV
GRMZM2G035118_P01
PUF
765
798
ELDGHVMRCVRDQNGNHVIQKCIECVPTEHIGFV
GRMZM2G035118_P01
PUF
801
835
AFQGQVASLSMHPYGCRVIQRVLEHCGGTSQSQCI
GRMZM2G035118_P01
PUF
838
873
EILQSACVLAQDQYGNYVTQHVLERGNAHERSQIII
GRMZM2G035118_P01
PUF
874
908
KLAGQVVTMSQNKFASNVIEKCFQHGDMAERDLLI
GRMZM2G035118_P01
PUF
916
950
EGNDNLLAMMKDQYANYVVQKILETCNENQRELLV
GRMZM2G035118_P02
PUF
220
253
ELDGHVMRCVRDQNGNHVIQKCIECVPTEHIGFV
GRMZM2G035118_P02
PUF
256
290
AFQGQVASLSMHPYGCRVIQRVLEHCGGTSQSQCI
GRMZM2G035118_P02
PUF
293
328
EILQSACVLAQDQYGNYVTQHVLERGNAHERSQIII
GRMZM2G035118_P02
PUF
329
363
KLAGQVVTMSQNKFASNVIEKCFQHGDMAERDLLI
GRMZM2G035118_P02
PUF
371
405
EGNDNLLAMMKDQYANYVVQKILETCNENQRELLV
Links
Other
PUF
family RBPs
Other
Zea mays
RBPs
30 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
Sb07g026995
Sorghum bicolor
Sb07g026995
N
0.957
LOC_Os08g40830
Oryza sativa
LOC_Os08g40830
N
0.932
BGIOSIBCE028530
Oryza indica
BGIOSIBCE028530
N
0.932
GRMZM2G449123
Zea mays
GRMZM2G449123
N
0.921
BRADI3G40520
Brachypodium distachyon
BRADI3G40520
N
0.896
GSVIVG00029553001
Vitis vinifera
GSVIVG00029553001
N
0.777
Cucsa.149730
Cucumis sativus
Cucsa.149730
N
0.765
MDP0000277305
Malus x domestica
MDP0000277305
N
0.765
B9HK27_POPTR
Populus trichocarpa
POPTR_0008s00490
N
0.758
GSVIVG00031557001
Vitis vinifera
GSVIVG00031557001
N
0.756
MDP0000265231
Malus x domestica
MDP0000265231
N
0.753
PK12245.1
Cannabis sativa
PK12245.1
N
0.753
30169.m006300
Ricinus communis
30169.m006300
N
0.751
ppa000898m
Prunus persica
ppa000898m
N
0.749
ppa016404m
Prunus persica
ppa016404m
N
0.748
cassava9350.m1
Manihot esculenta
cassava9350.m1
N
0.744
MDP0000313902
Malus x domestica
MDP0000313902
N
0.740
LOC_Os09g32210
Oryza sativa
LOC_Os09g32210
N
0.739
cassava43126.valid.m1
Manihot esculenta
cassava43126.valid.m1
N
0.731
Glyma09g06460.1
Glycine max
Glyma09g06460.1
N
0.728
Glyma15g17680.1
Glycine max
Glyma15g17680.1
N
0.728
mgf006786m
Mimulus guttatus
mgf006786m
N
0.727
BRADI4G34110
Brachypodium distachyon
BRADI4G34110
N
0.726
POPTR_0022s00840
Populus trichocarpa
POPTR_0022s00840
N
0.721
gw1.2.45.1
Selaginella moellendorfii
gw1.2.45.1
N
0.713
e_gw1.96.1.1
Physcomitrella patens
e_gw1.96.1.1
N
0.713
mgf002285m
Mimulus guttatus
mgf002285m
N
0.710
Glyma13g00670.1
Glycine max
Glyma13g00670.1
N
0.709
Medtr2g041730
Medicago truncatula
Medtr2g041730
N
0.707
estExt_Genewise1.C_350182
Physcomitrella patens
estExt_Genewise1.C_350182
N
0.702